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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc002579.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | DBB | ||||||||
Protein Properties | Length: 237aa MW: 26172.2 Da PI: 7.3707 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.3 | 5.7e-07 | 4 | 30 | 5 | 31 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedCll 31 C+ +e+ ++lfC ++ lC+ C + Itr_sc002579.1_g00005.1 4 LCDACESAAAILFCAADEAALCRACDE 30 7************************87 PP | |||||||
2 | zf-B_box | 26 | 1.9e-08 | 77 | 116 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 + ++C+ +e+ ++ ++Ce +++ lC +C + H g H Itr_sc002579.1_g00005.1 77 KVQRCDICENAPAFFYCEIDGSSLCLQCDMMVHVGgkrtH 116 6799**************************9996544455 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 8.973 | 1 | 30 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 0.21 | 1 | 41 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 6.94E-5 | 3 | 32 | No hit | No description |
PROSITE profile | PS50119 | 9.186 | 76 | 121 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 5.5E-11 | 76 | 121 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 4.0E-6 | 77 | 110 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.50E-6 | 80 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0010100 | Biological Process | negative regulation of photomorphogenesis | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MRTLCDACES AAAILFCAAD EAALCRACDE KVALSGSVCM LSSLFVLLRM LSRVLQVHMC 60 NKLASRHVRV GLADPSKVQR CDICENAPAF FYCEIDGSSL CLQCDMMVHV GGKRTHGRYL 120 LIRQRIEFPG DKSGPLDEPG LQPTEKAEPR REPNHPFKLM MKENKPTNRD SAVAMLDKNA 180 DVGSKMENKL IDLNTRPHRM HGQASANQEP GIDGLSDNNH EPGCVIPIGP LKRETEK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC239650 | 3e-36 | AC239650.4 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-23c6 map 1, complete sequence. | |||
GenBank | HG975440 | 3e-36 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. | |||
GenBank | HG975513 | 3e-36 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019157431.1 | 1e-150 | PREDICTED: B-box zinc finger protein 19-like isoform X1 | ||||
Swissprot | C0SVM5 | 1e-76 | BBX19_ARATH; B-box zinc finger protein 19 | ||||
TrEMBL | A0A328E335 | 1e-114 | A0A328E335_9ASTE; Uncharacterized protein | ||||
TrEMBL | A0A484LD41 | 1e-114 | A0A484LD41_9ASTE; Uncharacterized protein | ||||
STRING | XP_009631316.1 | 1e-110 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3175 | 23 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38960.3 | 8e-82 | DBB family protein |