PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002552.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 379aa    MW: 42688.9 Da    PI: 4.4393
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002552.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.73.9e-20124174256
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                              +++GVr+++ +g+W+AeIrdp+    r  r +lg+++taeeAa  +++a++kl+g+
  Itr_sc002552.1_g00001.1 124 KFRGVRQRP-WGKWAAEIRDPT----RgVRLWLGTYDTAEEAAMVYDNAALKLRGP 174
                              89*******.**********84....35**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.9E-30123181IPR001471AP2/ERF domain
CDDcd000182.32E-33124180No hitNo description
PROSITE profilePS5103223.788124181IPR001471AP2/ERF domain
PfamPF008473.7E-13124173IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-22124180IPR016177DNA-binding domain
SMARTSM003802.2E-37124187IPR001471AP2/ERF domain
PRINTSPR003674.4E-10125136IPR001471AP2/ERF domain
PRINTSPR003674.4E-10147163IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MDPFTFCPIK YTEHRHEIKK FAKPSAALNP GMFSEGRKRR PVNGSTGPKK VRITVTDPDA  60
TDTSSDEEEV FERRRVRRYI HEINIETAVN IDAVKKRPVA EALQGKQKQK QVRVKEAAPN  120
GVRKFRGVRQ RPWGKWAAEI RDPTRGVRLW LGTYDTAEEA AMVYDNAALK LRGPDALTNF  180
VKPPAIETPE VNAASSSGYD SSDESRHLPS PTSVLRFRTT KCSEESEPHC KSESEPVHSD  240
CSVHDCVESD QAVQQSDPVQ SDQAVQQSDP VQSDVADLPG DINDDIPFID NFFDTQSPKQ  300
TLLDDSSSNF VTTDFDTTSD FWLPDFGNDL FRDDFGFCND FGDFDKFDDS FQDLSTLNVS  360
DYFEDDVDEF SLVDSFLVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-21123180159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A6e-21123180462ATERF1
3gcc_A6e-21123180462ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU1719889e-47GU171988.1 Ipomoea batatas microsatellite Stv_Ipb_1659 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019177798.10.0PREDICTED: ethylene-responsive transcription factor CRF1-like
TrEMBLA0A314L4X81e-119A0A314L4X8_NICAT; Ethylene-responsive transcription factor crf4
STRINGXP_009596437.11e-115(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.16e-42cytokinin response factor 4