PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002468.1_g00006.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family SBP
Protein Properties Length: 813aa    MW: 90889.4 Da    PI: 6.3559
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002468.1_g00006.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP115.33.4e-36141218178
                              --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                      SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                              +Cqv++Cead+se+k yhrrh+vC  +++a++v+++g+++r+CqqC++fh l +fDe+krsCrr+L++hn+rrr+k+a
  Itr_sc002468.1_g00006.1 141 RCQVPDCEADISELKGYHRRHRVCLSCANAASVVLDGESKRYCQQCGKFHVLLDFDEGKRSCRRKLERHNNRRRRKSA 218
                              6*************************************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.3E-28135203IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.299139216IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.8E-33140219IPR004333Transcription factor, SBP-box
PfamPF031108.0E-27142216IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 813 aa     Download sequence    Send to blast
MENPTAAPPP PIESPPQSKN TQMTSAITQL PDDPVASSSL FDWSDFLEFN LDDHLNISFD  60
SSEQQPDFPS PQPPITEADP GRVRKRDPRL VCSNFLAGRI PCACPELDEQ LEEEELAALG  120
SAGKKKPRTA RASAAGQSSA RCQVPDCEAD ISELKGYHRR HRVCLSCANA ASVVLDGESK  180
RYCQQCGKFH VLLDFDEGKR SCRRKLERHN NRRRRKSADS KGSAEKEPQQ VLVADEGDFD  240
EDSSKDGTGM GSQIIERDVL LESEGHLSTL CSTIGSQTIQ SDSIRPFAAS GEEQSEKEKE  300
NLKYTHSPSY CDNRSALSSV CPTGRISFKL YDWNPAEFPR RLRHQIFQWL ASMPVELEGY  360
IRPGCTILTL FITMPHFKWA KLLEEPAIQL RDLMLSPGNM LHGRGTFLIY LNNMVFRATK  420
GGTSIMKVKL KGKTPKLYYV HPTCFEAGKP MEFFVCGSNL LQSKFRFIDY KYQGQTLIKQ  480
LFTWFLVSFS EKYLANDFRV SSCCKIEGDS SSLDHQLLKV NVPQTNADLF GPAFIEVENE  540
CGLSNFVPIL IADKDICAEM GRMLVKLNRS LNPRGQQFAS SCPSCEHSNL RDTELSDFML  600
DVAWLLREPV VESTQLLTST LIQRFRRLLN LLIENESTSI LERALSNIKI VMDNGSDAGI  660
AESELNIFRG TLDAAHTFLS QRLINVRESL VGSCATDARR EKSLTQIYKN EMQPVIPAIN  720
QDLENNMCKS ESRLTFVDDS STAPLLTMTS VDLKERPWKS CSPSFGKTVL TSRPLVFAIT  780
AMAVCFGVCA VALHPSSVGE FTTTIRRCLF DNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A2e-45138224288squamosa promoter binding protein-like 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202214RRKLERHNNRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019156944.10.0PREDICTED: squamosa promoter-binding-like protein 7
TrEMBLA0A484LUE60.0A0A484LUE6_9ASTE; Uncharacterized protein
STRINGXP_009783501.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54072433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.30.0squamosa promoter binding protein-like 7