PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002452.1_g00006.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 512aa    MW: 57911.6 Da    PI: 8.1565
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002452.1_g00006.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.54.2e-152669146
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                             rg+++++E+  ++d+++  G++ W+ Ia++++ gRt++++k++w++
  Itr_sc002452.1_g00006.1 26 RGSFSEQEERTIIDVHRIIGNR-WAQIAKHLP-GRTDNEVKNFWNS 69
                             899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.333120IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.5E-10632IPR009057Homeodomain-like
SuperFamilySSF466893.85E-20779IPR009057Homeodomain-like
PROSITE profilePS5129424.582175IPR017930Myb domain
SMARTSM007172.2E-142573IPR001005SANT/Myb domain
PfamPF002495.2E-142669IPR001005SANT/Myb domain
CDDcd001671.24E-92868No hitNo description
Gene3DG3DSA:1.10.10.602.4E-193371IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MGPGLQRCGK SCRLRWINYL RPDLRRGSFS EQEERTIIDV HRIIGNRWAQ IAKHLPGRTD  60
NEVKNFWNSC IKKKLIAQGL DPNTHNLISP SQAKTTKHNN SHTRHQNSSS SAFTIETCSS  120
SHKDVVPMEI KATLAAAFPP FPPPPNDKLL YHKNTITLSH ERNNPVMDYA SCSSMEITSN  180
HNNLSSSSSS NLSGFGILNS NNCMWGGTTN LELLFGGSTA AGRQEEEEEE EEDHIQEEKE  240
AGTETQTGAN QVYKLNIDDE FNNNNGQSIQ INLFDNSNIG IDFVESSLMP CAMYWEEMER  300
KSDLKMLESP PQTMRKGGLN SCQKVEIRGC PNWIIHAITT RGGWRGCILE TVHAYHHACW  360
SRGERVKFPS LSTKTIKLWL TKCKEYAEEV KVSKGHGALI AMAWAITHSS HPLGLFFRVT  420
RLHMDLHAFS KTVQWVPESK RGGSPPLYSS HLLGSLRDKR LHMDLYAFSK TVQWLPYILA  480
RWLASCFISR SGHFEAFILI SPNLPLMPFS WD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-2277540108B-MYB
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU1721373e-44GU172137.1 Ipomoea batatas microsatellite Stv_Ipb_2538 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019150556.11e-145PREDICTED: trichome differentiation protein GL1-like isoform X1
TrEMBLA0A2G2VS571e-75A0A2G2VS57_CAPBA; Transcription factor MYB26
STRINGXP_009783085.12e-73(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.19e-51myb domain protein 67