PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc002407.1_g00002.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

SBP

Protein Properties

Length: 384aa MW: 40491.8 Da PI: 8.731

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc002407.1_g00002.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	140	6.5e-44	77	152	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +CqvegC+adls+ak y++rhkvC +hsk+p+v+v+gleqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+ Itr_sc002407.1_g00002.1 77 RCQVEGCNADLSDAKAYYSRHKVCGMHSKSPTVIVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKP 152 6*************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	4.0E-36	71	139	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.59	75	152	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	9.68E-42	76	157	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	4.1E-33	78	151	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
MELGSSSSSS SSSAGKASDS SLNIGLKIGQ KVYFKDVSGS SSSAAGGGGG GSALPPPPPS 60 PAKKGRSAVV QGGQPPRCQV EGCNADLSDA KAYYSRHKVC GMHSKSPTVI VAGLEQRFCQ 120 QCSRFHQLPE FDQGKRSCRR RLAGHNERRR KPPPGTMLPS RYPGLASPLL DGSSKGSGSF 180 LMDFASYQNP GGRDSWPNTR AFGRAWDGQN TPPGRFLEQR WQGSSEDPPP ELLLQGAPAG 240 TAYTGPNVPS GECFAGVSSS TRALSLLSNQ PCWGSRNQQP LALGVNTLLT TDGTPTVHHS 300 ASQDAAAINE FSHHPPWGFK GGQATASSTE MLPDLGLGKI SHPADSHFSG ELGMAQQTEP 360 GREYVGLEQS RGYDSSIQNV HWTL

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

MELGSSSSSS SSSAGKASDS SLNIGLKIGQ KVYFKDVSGS SSSAAGGGGG GSALPPPPPS  60
PAKKGRSAVV QGGQPPRCQV EGCNADLSDA KAYYSRHKVC GMHSKSPTVI VAGLEQRFCQ  120
QCSRFHQLPE FDQGKRSCRR RLAGHNERRR KPPPGTMLPS RYPGLASPLL DGSSKGSGSF  180
LMDFASYQNP GGRDSWPNTR AFGRAWDGQN TPPGRFLEQR WQGSSEDPPP ELLLQGAPAG  240
TAYTGPNVPS GECFAGVSSS TRALSLLSNQ PCWGSRNQQP LALGVNTLLT TDGTPTVHHS  300
ASQDAAAINE FSHHPPWGFK GGQATASSTE MLPDLGLGKI SHPADSHFSG ELGMAQQTEP  360
GREYVGLEQS RGYDSSIQNV HWTL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	4e-33	78	151	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019186327.1	0.0	PREDICTED: squamosa promoter-binding-like protein 9
TrEMBL	A0A1J6IJ46	1e-136	A0A1J6IJ46_NICAT; Squamosa promoter-binding-like protein 9
STRING	VIT_08s0007g06270.t01	1e-133	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4571	22	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42200.1	1e-56	squamosa promoter binding protein-like 9