PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc002401.1_g00002.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NF-YA

Protein Properties

Length: 161aa MW: 17730.9 Da PI: 10.4489

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc002401.1_g00002.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	95.3	7e-30	80	133	4	58
CBFB_NFYA 4 lYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 ++VNaKQy++Il+RRq+Rakl ++++l k+rkpy+heSRh hA++R RgsgGrF Itr_sc002401.1_g00002.1 80 IFVNAKQYHGILRRRQMRAKLVAQNRL-LKTRKPYMHESRHLHAVNRVRGSGGRF 133 8************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	7.5E-32	75	136	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	33.184	76	136	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.2E-20	79	101	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.3E-25	80	133	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.2E-20	110	133	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
MRPAFLVDNL EVSTNSNSSQ KAETGQATST ILHSSYNCSE DDPNFNGLIF TAYGTQPHEV 60 VGFSSARLPL PFDVADDGLI FVNAKQYHGI LRRRQMRAKL VAQNRLLKTR KPYMHESRHL 120 HAVNRVRGSG GRFLSSKKAH HLDSPSSSPN SLQASTSAIA P

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	9e-20	80	152	5	75	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the blue light (BL) and abscisic acid (ABA) signaling pathways. {ECO:0000250, ECO:0000269\|PubMed:17322342}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019173376.1	1e-76	PREDICTED: nuclear transcription factor Y subunit A-8-like isoform X2
Refseq	XP_019173377.1	1e-76	PREDICTED: nuclear transcription factor Y subunit A-8-like isoform X2
Swissprot	Q9SYH4	2e-36	NFYA5_ARATH; Nuclear transcription factor Y subunit A-5
TrEMBL	M0ZH82	1e-45	M0ZH82_SOLTU; Uncharacterized protein
STRING	Solyc12g009050.1.1	2e-46	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5009	23	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54160.1	1e-38	nuclear factor Y, subunit A5

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gao W,Liu W,Zhao M,Li WX NERF encodes a RING E3 ligase important for drought resistance and enhances the expression of its antisense gene NFYA5 in Arabidopsis. Nucleic Acids Res., 2015. 43(1): p. 607-17 [PMID:25514924] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Nasim Z,Fahim M,Ahn JH Possible Role of MADS AFFECTING FLOWERING 3 and B-BOX DOMAIN PROTEIN 19 in Flowering Time Regulation of Arabidopsis Mutants with Defects in Nonsense-Mediated mRNA Decay. Front Plant Sci, 2017. 8: p. 191 [PMID:28261246] Du Q,Zhao M,Gao W,Sun S,Li WX microRNA/microRNA* complementarity is important for the regulation pattern of NFYA5 by miR169 under dehydration shock in Arabidopsis. Plant J., 2017. 91(1): p. 22-33 [PMID:28332758] Huang KC,Lin WC,Cheng WH Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis. BMC Plant Biol., 2018. 18(1): p. 40 [PMID:29490615]