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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Itr_sc002401.1_g00002.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
| Family |
NF-YA |
| Protein Properties |
Length: 161aa MW: 17730.9 Da PI: 10.4489 |
| Description |
NF-YA family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Itr_sc002401.1_g00002.1 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | CBFB_NFYA | 95.3 | 7e-30 | 80 | 133 | 4 | 58 |
CBFB_NFYA 4 lYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58
++VNaKQy++Il+RRq+Rakl ++++l k+rkpy+heSRh hA++R RgsgGrF
Itr_sc002401.1_g00002.1 80 IFVNAKQYHGILRRRQMRAKLVAQNRL-LKTRKPYMHESRHLHAVNRVRGSGGRF 133
8**************************.**************************9 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 161 aa
Download sequence Send
to blast |
MRPAFLVDNL EVSTNSNSSQ KAETGQATST ILHSSYNCSE DDPNFNGLIF TAYGTQPHEV 60
VGFSSARLPL PFDVADDGLI FVNAKQYHGI LRRRQMRAKL VAQNRLLKTR KPYMHESRHL 120
HAVNRVRGSG GRFLSSKKAH HLDSPSSSPN SLQASTSAIA P
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the blue light (BL) and abscisic acid (ABA) signaling pathways. {ECO:0000250, ECO:0000269|PubMed:17322342}. |
| Publications
? help Back to Top |
- Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Gao W,Liu W,Zhao M,Li WX
NERF encodes a RING E3 ligase important for drought resistance and enhances the expression of its antisense gene NFYA5 in Arabidopsis.
Nucleic Acids Res., 2015. 43(1): p. 607-17
[PMID:25514924] - Zhao H, et al.
The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
Front Plant Sci, 2016. 7: p. 2045
[PMID:28119722] - Nasim Z,Fahim M,Ahn JH
Possible Role of MADS AFFECTING FLOWERING 3 and B-BOX DOMAIN PROTEIN 19 in Flowering Time Regulation of Arabidopsis Mutants with Defects in Nonsense-Mediated mRNA Decay.
Front Plant Sci, 2017. 8: p. 191
[PMID:28261246] - Du Q,Zhao M,Gao W,Sun S,Li WX
microRNA/microRNA* complementarity is important for the regulation pattern of NFYA5 by miR169 under dehydration shock in Arabidopsis.
Plant J., 2017. 91(1): p. 22-33
[PMID:28332758] - Huang KC,Lin WC,Cheng WH
Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
BMC Plant Biol., 2018. 18(1): p. 40
[PMID:29490615]
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