PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002395.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NF-YB
Protein Properties Length: 94aa    MW: 10543.5 Da    PI: 4.5099
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002395.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB102.53e-321633597
                    NF-YB 35 vqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97
                             +qec+sefisfvt+eas+kcq+e+rkt+ngdd++wal++lGf+ y+e+++ yl+k+re e+++
  Itr_sc002395.1_g00001.1  1 MQECASEFISFVTGEASEKCQKENRKTVNGDDICWALSSLGFDVYAEAMTRYLHKFREYERQR 63
                             79**********************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR006151.9E-17119No hitNo description
SuperFamilySSF471138.38E-24177IPR009072Histone-fold
Gene3DG3DSA:1.10.20.104.2E-31177IPR009072Histone-fold
PfamPF008082.1E-13137IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PROSITE patternPS006850420IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.9E-172038No hitNo description
PRINTSPR006151.9E-173957No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MQECASEFIS FVTGEASEKC QKENRKTVNG DDICWALSSL GFDVYAEAMT RYLHKFREYE  60
RQRANQTKGA SSNDDDGSPC SQPDKQTAGE TAYI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B8e-251583592Transcription factor HapC (Eurofung)
4g92_B8e-251583592Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019158596.14e-54PREDICTED: nuclear transcription factor Y subunit B-5-like
SwissprotO040276e-32NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBLA0A1J6KBZ11e-40A0A1J6KBZ1_NICAT; Nuclear transcription factor y subunit b-4
STRINGXP_009760265.18e-41(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09030.12e-34nuclear factor Y, subunit B4
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]