PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002355.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ARR-B
Protein Properties Length: 628aa    MW: 69861.9 Da    PI: 5.2828
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002355.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like57.72.6e-18227270145
                  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtleh 45 
                              kpr++W+ eLH++Fv av++L G++kA Pk+ilelm+v+ Lt+e+
  Itr_sc002355.1_g00001.1 227 KPRVVWSLELHQKFVAAVNHL-GIDKAMPKRILELMNVEKLTREN 270
                              79*******************.********************986 PP
2Response_reg61.25.3e-216515222109
                              TCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HH CS
             Response_reg  22 gyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpe 105
                              ++  v+++ ++ +al+ll+e++  +Dl++ D++mp+mdG++ll+     e++lp+i+++a+g+ +++ + +  Ga d+l Kp+ +e
  Itr_sc002355.1_g00001.1  65 QF-AVTTTNQAIQALQLLRENKnqFDLVISDVDMPDMDGFKLLELVGL-EMDLPVIMLSAYGDTNLVMKGITHGACDYLLKPVRIE 148
                              56.8999***********888888*******************87754.558********************************** PP

                              HHHH CS
             Response_reg 106 elvk 109
                              el +
  Itr_sc002355.1_g00001.1 149 ELKN 152
                              *987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.31E-271644IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.5E-3817178No hitNo description
SMARTSM004481.7E-2218154IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011038.17119158IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.17E-2421158No hitNo description
PfamPF000721.0E-1765152IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521721.31E-2786165IPR011006CheY-like superfamily
Gene3DG3DSA:1.10.10.609.9E-19224278IPR009057Homeodomain-like
SuperFamilySSF466895.2E-11225278IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-15227270IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    Send to blast
MTVEQRNDKQ NDQFPLGMRV LAVDDNPTCL MVLENLLRKC QYHVAVLLES ASVIDTVLVI  60
NSLFQFAVTT TNQAIQALQL LRENKNQFDL VISDVDMPDM DGFKLLELVG LEMDLPVIML  120
SAYGDTNLVM KGITHGACDY LLKPVRIEEL KNIWQHVLRR KKFDCEEQKI SNKPDGESGE  180
LGRGFRGMGE TDRNGKPTRK RKDQSDDEDE ELDENGGRNE DPSAQKKPRV VWSLELHQKF  240
VAAVNHLGID KAMPKRILEL MNVEKLTREN KYRIYLKRLN SVASQHANMV SVLGSADPSY  300
LRMGSLNNIG NMPFITGCTQ FSDAPLRSIS SGSVLTRLNT PSGLGMCGFA PSSMIQLANA  360
PNSSSSITSE INFRQSIQPG NQDMDILEGM PMPLGTDQVH NNLGVTHLYP FSNGMPERKI  420
DVDGRRNLTI GVSDNSIILR SQGQSVQRKD FLDNQFPVIA SPMSSASSPF LNTTRCNDNW  480
PTASQSSLLE ANSFGTSVYS HHAMPRDLGN NGSTLEVPMS SNLHNPLNSA CPQVPDTRTE  540
MQCLTTIIDN VSGVKMNFSP RQDWHDFEPD SAHVPSLVCS SAHTFLPPDD GQRQQQHDEF  600
ENAAVDMKQE YLEEQKKLAG NNAYGQMG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-19223280164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019173761.10.0PREDICTED: two-component response regulator ORR24-like isoform X2
SwissprotA2X1N21e-120ORR24_ORYSI; Two-component response regulator ORR24
TrEMBLA0A2R6QZC60.0A0A2R6QZC6_ACTCH; Two-component response regulator
STRINGXP_008220696.11e-169(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22582458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-116response regulator 12