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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc002272.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | ZF-HD | ||||||||
Protein Properties | Length: 261aa MW: 29440.9 Da PI: 7.7271 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 101.5 | 5.9e-32 | 50 | 106 | 2 | 59 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +++rYkeClkNhA+ +GghavDGCgEfmp+ geeg+ ++lkCaAC+CHRnFHR+e +e Itr_sc002272.1_g00005.1 50 TNYRYKECLKNHAVGIGGHAVDGCGEFMPA-GEEGSFDGLKCAACNCHRNFHRKEAAE 106 5789*************************9.999********************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 3.4E-28 | 52 | 104 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-21 | 53 | 104 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.1E-29 | 53 | 103 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.348 | 54 | 103 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-5 | 168 | 207 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MEMEFDEERE EEMEMEEIEE AGDYQTPAGR GLEGAPARKS GGGSAAAATT NYRYKECLKN 60 HAVGIGGHAV DGCGEFMPAG EEGSFDGLKC AACNCHRNFH RKEAAESEGY ARHQSPPHHH 120 HNLHPIHHHH HFSTFSSYRA PHPSGYLHVT PPSHHRQLAL PSSSRDEEDM SNPSSSGGGS 180 KKRFRTKFTA EQKIGLLPVI IYKKWSTRII RDSHLRNASL VLYETRTRLA FRKCESATIL 240 FAYEKCVWRI THFPYANMVV R |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019174170.1 | 2e-82 | PREDICTED: zinc-finger homeodomain protein 2-like | ||||
TrEMBL | A0A1U8GJS2 | 2e-53 | A0A1U8GJS2_CAPAN; zinc-finger homeodomain protein 2-like | ||||
STRING | XP_009602563.1 | 8e-52 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA518 | 24 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 7e-37 | homeobox protein 22 |