PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Itr_sc002272.1_g00005.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

ZF-HD

Protein Properties

Length: 261aa MW: 29440.9 Da PI: 7.7271

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc002272.1_g00005.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	101.5	5.9e-32	50	106	2	59
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +++rYkeClkNhA+ +GghavDGCgEfmp+ geeg+ ++lkCaAC+CHRnFHR+e +e Itr_sc002272.1_g00005.1 50 TNYRYKECLKNHAVGIGGHAVDGCGEFMPA-GEEGSFDGLKCAACNCHRNFHRKEAAE 106 5789***********************9.999******************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	3.4E-28	52	104	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	2.0E-21	53	104	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.1E-29	53	103	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.348	54	103	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	2.1E-5	168	207	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MEMEFDEERE EEMEMEEIEE AGDYQTPAGR GLEGAPARKS GGGSAAAATT NYRYKECLKN 60 HAVGIGGHAV DGCGEFMPAG EEGSFDGLKC AACNCHRNFH RKEAAESEGY ARHQSPPHHH 120 HNLHPIHHHH HFSTFSSYRA PHPSGYLHVT PPSHHRQLAL PSSSRDEEDM SNPSSSGGGS 180 KKRFRTKFTA EQKIGLLPVI IYKKWSTRII RDSHLRNASL VLYETRTRLA FRKCESATIL 240 FAYEKCVWRI THFPYANMVV R

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019174170.1	2e-82	PREDICTED: zinc-finger homeodomain protein 2-like
TrEMBL	A0A1U8GJS2	2e-53	A0A1U8GJS2_CAPAN; zinc-finger homeodomain protein 2-like
STRING	XP_009602563.1	8e-52	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA518	24	128

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	7e-37	homeobox protein 22