PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Itr_sc002258.1_g00006.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Dof

Protein Properties

Length: 269aa MW: 29754.1 Da PI: 4.5652

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc002258.1_g00006.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.2	7.5e-38	32	88	6	62
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +cprC stntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rk ++s+ Itr_sc002258.1_g00006.1 32 PNCPRCASTNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKTRRSK 88 58***************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-29	18	86	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.565	32	86	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.6E-32	32	86	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	34	70	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MLSSESSPML DCHSIRPILM DRKWKPNIEL APNCPRCAST NTKFCYYNNY SLSQPRYFCK 60 GCRRYWTKGG SLRNVPVGGG CRKTRRSKSA RQAAEQQRSN AHHAPAGGLD NGSAGAEEID 120 MAAVFAKYLN QGDLSPSGAT SSTSASMALS SLDSESQVDE LLLLDYQEDP SPLFLDQAVE 180 LQESSPQASI NVEEHLLDYN QSALDLQALL EDDQWPNFAW QQPMIQQQDL GTFFGDNDLV 240 YPTKASTTLP NNDVWGSFDL SGCEILPRP

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ857274	6e-41	DQ857274.1 Glycine max Dof23 mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019174332.1	1e-160	PREDICTED: dof zinc finger protein DOF1.2
TrEMBL	A0A068VC27	4e-70	A0A068VC27_COFCA; Uncharacterized protein
STRING	PGSC0003DMT400002060	6e-63	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	9e-43	Dof family protein