PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc002208.1_g00004.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HD-ZIP

Protein Properties

Length: 915aa MW: 100719 Da PI: 6.8373

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc002208.1_g00004.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55	1.3e-17	20	75	3	54
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRak 54 k ++t+eq+e+Le+l++++++ps +r++L +++ +++ +q+kvWFqNrR + Itr_sc002208.1_g00004.1 20 KYVRYTPEQIEALERLYHECPKPSSLRRQQLIRECpllaNIEPKQIKVWFQNRRGR 75 5679**************************************************77 PP
2	START	178.1	5.3e-56	218	426	2	205
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECT CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetleviss 87 laee+++e+++ka+ ++ Wv+++ +++g++++ +++ s+++ g a+ra+g+v +++ v+e+l+d++ W ++++++++l++ s+ Itr_sc002208.1_g00004.1 218 LAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCVGVASRACGLVGLEPT-RVAEILKDRPSWFRDCRAVDVLNAMST 302 7899****************************************************.8888888888************* PP T..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEE CS START 88 g..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwv 167 g g+++l +++l+a+++l+p Rdf+ +Ry+ +++g++vi+++S++++q+ p+ +++vRae+ pSg+li+p+++g+s +++v Itr_sc002208.1_g00004.1 303 GngGTVELLYMQLYAPTTLAPaRDFWLLRYTSVMEDGSLVICERSLNNTQNGPSmppVQHFVRAEMMPSGYLIRPCEGGGSIIHIV 388 ************************************************9988899*********************** PP E-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 168 ehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205 +hvdl+ ++++++lr+l++s++ ++t++a+l+++++ Itr_sc002208.1_g00004.1 389 DHVDLEPWSVPEVLRPLYESSTLLSQRTTLAALRHLRQ 426 *******************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.13E-15	15	75	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.576	15	79	IPR001356	Homeobox domain
SMART	SM00389	3.7E-13	17	83	IPR001356	Homeobox domain
CDD	cd00086	4.24E-15	20	79	No hit	No description
Pfam	PF00046	3.3E-15	21	75	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.5E-16	23	75	IPR009057	Homeodomain-like
CDD	cd14686	5.90E-5	124	164	No hit	No description
PROSITE profile	PS50848	26.343	208	436	IPR002913	START domain
CDD	cd08875	3.46E-80	212	427	No hit	No description
SMART	SM00234	2.8E-40	217	427	IPR002913	START domain
SuperFamily	SSF55961	7.55E-37	218	428	No hit	No description
Gene3D	G3DSA:3.30.530.20	1.2E-21	218	423	IPR023393	START-like domain
Pfam	PF01852	1.6E-53	218	426	IPR002913	START domain
Pfam	PF08670	6.2E-49	772	914	IPR013978	MEKHLA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 915 aa Download sequence Send to blast
MMAVTSSCKD SGKMGLDNGK YVRYTPEQIE ALERLYHECP KPSSLRRQQL IRECPLLANI 60 EPKQIKVWFQ NRRGRQGPSP APRGLLPLAL ENVMAIIAPS LQVIIFGGSG KRLISQVVLE 120 RGDATACREK QRKESSRLQA VNRKLTAMNK LLMEENDRLQ KQVSHLVYEN SYFRQHTQNA 180 ALTTTDNSCE SVVTSGQNNL TPQRPPPRDA SPAGLLSLAE ETLTEFLSKA TGTAVEWVQM 240 PGMKPGPDSI GIIAISHGCV GVASRACGLV GLEPTRVAEI LKDRPSWFRD CRAVDVLNAM 300 STGNGGTVEL LYMQLYAPTT LAPARDFWLL RYTSVMEDGS LVICERSLNN TQNGPSMPPV 360 QHFVRAEMMP SGYLIRPCEG GGSIIHIVDH VDLEPWSVPE VLRPLYESST LLSQRTTLAA 420 LRHLRQISQE ISQPTVTGWG RRPAALRALS QRLSKGFNEA VNGFTDEGWS MIESDCIDDV 480 TIMVNSSTAK LMGANLPYAN GLPPMSGAVL CAKASMLLQS KYMHYLLGIV FRVNDFMSFL 540 ALRETIFLLF WQNVPPAILL RFLREHRSEW ADSSIDAYSA AAVKAGPCSL PVARTGSFGG 600 QFMEVVRLEN MGHFREDMLT AGDIFLLQLC SGVDENAVGT CAELIFAPID ASFADDAPLL 660 PSGFRIIPLD SRADASSPNR TLDLASTLEV GTAGTRQTGD QSKQCSTSKS VMTIAFQFAF 720 EIHLQESIAA MARQYVRSII SSVQRVALAL SPSQLSPHAG LRPPPGTPEA HTLARWICQS 780 YRFFLGLDLL KSASEGGESI LKSLWHHSDA LMCCSLKALP VFSFANEAGL DMLETTLVAL 840 QDITLEKVFD DNGRKTLFSE LPQIMQQGFT CLQGGICLSS MGRPVSYERA VAWKVLNEEE 900 NPHSICFMFI NWSFV

Sequence ? help Back to Top

Protein Sequence Length: 915 aa Download sequence Send to blast

MMAVTSSCKD SGKMGLDNGK YVRYTPEQIE ALERLYHECP KPSSLRRQQL IRECPLLANI  60
EPKQIKVWFQ NRRGRQGPSP APRGLLPLAL ENVMAIIAPS LQVIIFGGSG KRLISQVVLE  120
RGDATACREK QRKESSRLQA VNRKLTAMNK LLMEENDRLQ KQVSHLVYEN SYFRQHTQNA  180
ALTTTDNSCE SVVTSGQNNL TPQRPPPRDA SPAGLLSLAE ETLTEFLSKA TGTAVEWVQM  240
PGMKPGPDSI GIIAISHGCV GVASRACGLV GLEPTRVAEI LKDRPSWFRD CRAVDVLNAM  300
STGNGGTVEL LYMQLYAPTT LAPARDFWLL RYTSVMEDGS LVICERSLNN TQNGPSMPPV  360
QHFVRAEMMP SGYLIRPCEG GGSIIHIVDH VDLEPWSVPE VLRPLYESST LLSQRTTLAA  420
LRHLRQISQE ISQPTVTGWG RRPAALRALS QRLSKGFNEA VNGFTDEGWS MIESDCIDDV  480
TIMVNSSTAK LMGANLPYAN GLPPMSGAVL CAKASMLLQS KYMHYLLGIV FRVNDFMSFL  540
ALRETIFLLF WQNVPPAILL RFLREHRSEW ADSSIDAYSA AAVKAGPCSL PVARTGSFGG  600
QFMEVVRLEN MGHFREDMLT AGDIFLLQLC SGVDENAVGT CAELIFAPID ASFADDAPLL  660
PSGFRIIPLD SRADASSPNR TLDLASTLEV GTAGTRQTGD QSKQCSTSKS VMTIAFQFAF  720
EIHLQESIAA MARQYVRSII SSVQRVALAL SPSQLSPHAG LRPPPGTPEA HTLARWICQS  780
YRFFLGLDLL KSASEGGESI LKSLWHHSDA LMCCSLKALP VFSFANEAGL DMLETTLVAL  840
QDITLEKVFD DNGRKTLFSE LPQIMQQGFT CLQGGICLSS MGRPVSYERA VAWKVLNEEE  900
NPHSICFMFI NWSFV

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269\|PubMed:15598805, ECO:0000269\|PubMed:15705957, ECO:0000269\|PubMed:16617092}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269\|PubMed:15773855, ECO:0000269\|PubMed:16033795, ECO:0000269\|PubMed:16617092, ECO:0000269\|PubMed:17237362}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019175908.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-15-like isoform X2
Refseq	XP_019175909.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-15-like isoform X2
Swissprot	Q9ZU11	0.0	ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBL	A0A484M094	0.0	A0A484M094_9ASTE; Uncharacterized protein
STRING	PGSC0003DMT400074934	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA457	24	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52150.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684]