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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc002179.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 218aa MW: 24494.3 Da PI: 5.0509 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 54 | 2.1e-17 | 20 | 64 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 k+i+n s r+v fskRr g++ KA+EL++LC+++v i+ s gk Itr_sc002179.1_g00001.1 20 KKIDNVSHRHVAFSKRRIGLFNKASELCILCGTQVVAIVESYGGK 64 68************************************9998775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.0E-22 | 12 | 72 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 20.815 | 12 | 64 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.97E-22 | 13 | 87 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-12 | 14 | 34 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.8E-16 | 21 | 69 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-12 | 34 | 49 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-12 | 49 | 70 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MENNSAKKKQ TQGRRKIEIK KIDNVSHRHV AFSKRRIGLF NKASELCILC GTQVVAIVES 60 YGGKRVFTFG HPSADAVIER YLSNVPPRPA SEDDAPEENA VAQRYHRAWQ ELSAEKEKAA 120 ERDNGRGGGD HWWDLPIEDM GAMELEEFTA ALEELKKKAV LRADELEAAA AIIADNNYPN 180 NVNNNNLASS EVLTMLMNNN DDHTYETIDE CFNWFAAS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019165299.1 | 3e-93 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A484NGH3 | 4e-70 | A0A484NGH3_9ASTE; Uncharacterized protein | ||||
STRING | Solyc01g106700.2.1 | 1e-47 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2134 | 22 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-28 | AGAMOUS-like 62 |