 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Itr_sc002159.1_g00002.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 329aa MW: 37257.4 Da PI: 4.7737 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Itr_sc002159.1_g00002.1 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 59.6 | 5.2e-19 | 89 | 143 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
k++++t eq+ Le+ Fe ++++ e++ +LAk+lgL+ rq+ +WFqNrRa++k+
Itr_sc002159.1_g00002.1 89 KKRRLTGEQVLFLEKSFEVENKLEPERKVQLAKELGLQPRQIAIWFQNRRARWKN 143
56789************************************************95 PP
|
| 2 | HD-ZIP_I/II | 127.7 | 5e-41 | 88 | 178 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86
ekkrrl+ eqv +LE+sFe e+kLeperKv+la+eLglqprq+a+WFqnrRAR+k+kqlEkdy+ Lk++yd lk++ ++L +e+++
Itr_sc002159.1_g00002.1 88 EKKRRLTGEQVLFLEKSFEVENKLEPERKVQLAKELGLQPRQIAIWFQNRRARWKNKQLEKDYDGLKARYDDLKAKYDSLLNEKDS 173
69************************************************************************************ PP
HD-ZIP_I/II 87 Lreel 91
L++e+
Itr_sc002159.1_g00002.1 174 LKAEV 178
**987 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 329 aa
Download sequence Send
to blast |
MEAGRGLFYG AAAAAGDSNF NALFLQNQRL PYQSSKEPLL TPGFSPSFHG SGSSSMVSFC 60
DGKGGFFRKF DQDENDCENY DDYFLQPEKK RRLTGEQVLF LEKSFEVENK LEPERKVQLA 120
KELGLQPRQI AIWFQNRRAR WKNKQLEKDY DGLKARYDDL KAKYDSLLNE KDSLKAEVLR 180
VMDKLVVKGK EKETLKFRDD IQHPSEAPSK DHMADSVAPS SPAPPVKLEG TSPSKSDVLD 240
SDSPRYTDGV HSSFPDIGDS SYVFEPERSD SDLSQDEDDS FSKNFMAASE SLSVFPKVRE 300
DHYPITIPPT NSSLYGFPVE DQTFGFWPY
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 136 | 144 | RRARWKNKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975515 | 8e-44 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
| GenBank | X94947 | 8e-44 | X94947.1 L.esculentum mRNA for homeobox protein. |
