PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002107.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family TALE
Protein Properties Length: 820aa    MW: 89508 Da    PI: 7.1796
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002107.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.33e-096226542254
                              SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                 Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                              ++yp+ +++  LA+++gLt +qV++WF N R +
  Itr_sc002107.1_g00002.1 622 HPYPTDADKHMLATQTGLTRNQVSNWFINARVR 654
                              89*****************************87 PP
2BELL93.22.4e-30474544272
                     BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                              r e q+ ++kLl +++eV++rY+qy++q+++v+ssFe vagl +a+pY+ lAlk+iSr+F ++k ai++q+
  Itr_sc002107.1_g00002.1 474 RSEYQQTRVKLLYMQDEVCRRYSQYHQQMHMVVSSFESVAGLSAATPYILLALKTISRSFYSIKSAISDQL 544
                              5789999*************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005748.1E-40396542IPR006563POX domain
PfamPF075265.7E-36401541IPR006563POX domain
PROSITE profilePS5007111.807595658IPR001356Homeobox domain
SMARTSM003892.8E-9598662IPR001356Homeobox domain
CDDcd000861.09E-11598659No hitNo description
SuperFamilySSF466899.84E-17600664IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.5E-28601662IPR009057Homeodomain-like
PfamPF059204.2E-18615654IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 820 aa     Download sequence    Send to blast
METRTHRPDL HVVQQSRRDK LRVQNIPSSS SPYLGDYSGN SEHWSLQNQG QNMDLAQLPS  60
CRYGNISYEQ SVLSSEMLNF GSDSHSLVPH KNDAVTVNQE PPSSPPGDKA GGGDNGQFSN  120
SFNHFVNVSG EPQNCGANWK SVGSQQICCD WNNVGANYSS GLGSSSVGPM AVGGSSSRGL  180
IPNCVKPGYF KYSEAQLNLS NTTSVIPGQF GHKQFEDMQF SAYCPEVTSG SCIETKMTTS  240
VSLPNPRESG RGGSWLDSRS ELHLLPAYGD QSSVLCVNSD SEMVNRGVEG CHQWQGEFER  300
GSQRNDISST QALSLSLSSV APSKPHFGAV GGQHNVPGDL NCGFDGMPGL RPLRSDYLCS  360
SSKQLSKMLE NAACQDTVVR NSTLAHLNVV PFGPFTGYAT ILKSSRFLKP AQQLLDELCN  420
FSGHSALTVS ALTKKVLDEV CLSNDAIEGS ATCPGGSMAG DNSGLYSVNE SYLRSEYQQT  480
RVKLLYMQDE VCRRYSQYHQ QMHMVVSSFE SVAGLSAATP YILLALKTIS RSFYSIKSAI  540
SDQLRNIRKT LGQELLSQAG RSKGDRVSSS LKLADHPLEK QRAIGSGMGF LDPQPQVWRP  600
QRGLPERAVA VLRAWLFDHF LHPYPTDADK HMLATQTGLT RNQVSNWFIN ARVRVWKPMV  660
EEIHMLETKA LTERGSNVGK PEVVTTTTEG ATQPNHIQHS NGFAFPNESQ YSNRLSMRGI  720
PGLQAECWSG IGERSHPASW GAQEKQSRTI NCHIPAAGMD GPLMGFVPYH QNNLEIGGLG  780
SVSLTLGLRQ SAGEGVQQQH EQPQQLRQHL GGQMIHDYLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A3e-16604661158Homeobox protein Meis1
4xrs_B3e-16604661158Homeobox protein Meis1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019178399.10.0PREDICTED: uncharacterized protein LOC109173615
RefseqXP_019178407.10.0PREDICTED: uncharacterized protein LOC109173615
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87202227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.18e-80BEL1-like homeodomain 8