PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc002092.1_g00013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | bHLH | ||||||||
Protein Properties | Length: 467aa MW: 52486.2 Da PI: 6.6447 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.2 | 6.2e-13 | 289 | 335 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h e+Er+RR+++N++f Lr+++P+ K++Ka+ L Av YI+ L Itr_sc002092.1_g00013.1 289 MNHVEAERQRREKLNHRFYALRSVVPNV-----SKMDKASLLADAVTYINRL 335 589************************6.....5***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 1.0E-37 | 17 | 179 | IPR025610 | Transcription factor MYC/MYB N-terminal |
SuperFamily | SSF47459 | 3.66E-18 | 285 | 356 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.971 | 286 | 335 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.91E-14 | 289 | 340 | No hit | No description |
Pfam | PF00010 | 1.6E-10 | 290 | 335 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.4E-17 | 290 | 349 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.8E-16 | 292 | 341 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 467 aa Download sequence Send to blast |
MEEILSSSSS SSIPNSLQKR IQFFLHNRPE WWVYAIFWQA TKGGHGRVVL SWGDGHFRGT 60 KGVGPSRSNP LQLQNKFEGE GLVEGNVTEY AEWYYMVSMT KSFAAPDDLI VQTFDSGSYI 120 WLSDSNQVQF YHSERAKEAH LHGINTLVCF STSAGVIELG SSDSIHEHWE LLQIGRSIFN 180 AQNTSLPQTQ NQTQSQDLFP FSQDLNQCLS PIDFRLGDPH QEKEKESCRA VDLHGPNSDI 240 KKEVLVINDL SPDSGNSDFF ETTLTHQSAM VGSRKRSRKG ALTGREMAMN HVEAERQRRE 300 KLNHRFYALR SVVPNVSKMD KASLLADAVT YINRLKAKVE DLENKLGTTH GENQMSRKRI 360 MEIMHDAQST TTSTVDHVMG GGCAFGAMDV EVKIIGSEAM IRVHSPDLNY PAARLMNVLR 420 EMELKIHHAS VSSVRDLMLQ DVVIRVPDGL TNEEDALKAV ILRRLQA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 5e-23 | 284 | 345 | 2 | 63 | Transcription factor MYC2 |
5gnj_B | 5e-23 | 284 | 345 | 2 | 63 | Transcription factor MYC2 |
5gnj_E | 5e-23 | 284 | 345 | 2 | 63 | Transcription factor MYC2 |
5gnj_F | 5e-23 | 284 | 345 | 2 | 63 | Transcription factor MYC2 |
5gnj_G | 5e-23 | 284 | 345 | 2 | 63 | Transcription factor MYC2 |
5gnj_I | 5e-23 | 284 | 345 | 2 | 63 | Transcription factor MYC2 |
5gnj_M | 5e-23 | 284 | 345 | 2 | 63 | Transcription factor MYC2 |
5gnj_N | 5e-23 | 284 | 345 | 2 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019192853.1 | 0.0 | PREDICTED: transcription factor bHLH14-like | ||||
TrEMBL | A0A1S3YPA9 | 1e-142 | A0A1S3YPA9_TOBAC; transcription factor MYC4-like | ||||
STRING | Solyc08g008600.2.1 | 1e-141 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1072 | 21 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17880.1 | 9e-73 | bHLH family protein |