PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Function |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Itr_sc002092.1_g00011.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

GRAS

Protein Properties

Length: 124aa MW: 13703.6 Da PI: 7.8142

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc002092.1_g00011.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	70.3	3.7e-22	5	119	36	149
GRAS 36 dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavege....ervHiiDf 117 ++++Rlaa+ ++AL + l + +s+ + +++ ++++s +l +f+ + P++++ + aN+ Il+a+ ++ +++Hi D+ Itr_sc002092.1_g00011.1 5 KANHRLAAHDLQALTHYLGS-GSSFA---GVTTFASTTSNFFRESLMIFNGINPWFRILNSFANSSILQALVEQpdrpKCLHIPDI 86 789*************99.44444...3334444457777778889******************9998899999** PP GRAS 118 disqGlQWpaLlqaLasRp.egppslRiTgvgs 149 ++s+G+QWp+Ll++L+ Rp ++pp l + ++ + Itr_sc002092.1_g00011.1 87 GVSHGIQWPTLLEELTHRPgGPPPLLHLSVITP 119 *****************55566999988876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	20.768	1	124	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.3E-19	5	119	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 124 aa Download sequence Send to blast
MSKYKANHRL AAHDLQALTH YLGSGSSFAG VTTFASTTSN FFRESLMIFN GINPWFRILN 60 SFANSSILQA LVEQPDRPKC LHIPDIGVSH GIQWPTLLEE LTHRPGGPPP LLHLSVITPT 120 VDNQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269\|PubMed:15961669, ECO:0000269\|PubMed:23077241}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269\|PubMed:15961669}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019196358.1	1e-65	PREDICTED: nodulation-signaling pathway 1 protein
Swissprot	Q4VYC8	8e-37	NSP1_MEDTR; Nodulation-signaling pathway 1 protein
TrEMBL	A0A076FNG4	1e-45	A0A076FNG4_TOBAC; GRAS16 protein
TrEMBL	A0A1S3Z0D8	1e-45	A0A1S3Z0D8_TOBAC; nodulation-signaling pathway 1 protein-like
STRING	XP_009594760.1	2e-46	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4949	21	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13840.1	2e-26	GRAS family protein

Publications ? help Back to Top
Cerri MR, et al. Medicago truncatula ERN transcription factors: regulatory interplay with NSP1/NSP2 GRAS factors and expression dynamics throughout rhizobial infection. Plant Physiol., 2012. 160(4): p. 2155-72 [PMID:23077241] Tang H, et al. An improved genome release (version Mt4.0) for the model legume Medicago truncatula. BMC Genomics, 2014. 15: p. 312 [PMID:24767513]