PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002059.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HSF
Protein Properties Length: 364aa    MW: 39856.3 Da    PI: 4.804
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002059.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.28.5e-36251162102
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 
                              Fl+k+y++++d+++++lisw+e+g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF ++ F+
  Itr_sc002059.1_g00001.1  25 FLTKTYQLVDDSSVDDLISWNEDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFMNECFR 101
                              9*****************************************************************99.........********* PP

                              XXXXXXXXXXXXXXX CS
             HSF_DNA-bind  88 kgkkellekikrkks 102
                              +g+k ll++i+r+k 
  Itr_sc002059.1_g00001.1 102 RGEKGLLRDIQRRKI 116
                              ************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.0E-3814108IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.0E-5721114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.59E-3522114IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.5E-3125114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-202548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MGPSPAEQTG ESAAVESQRS LPTPFLTKTY QLVDDSSVDD LISWNEDGST FIVWRPAEFA  60
RDLLPKYFKH NNFSSFVRQL NTYGFRKVVP DRWEFMNECF RRGEKGLLRD IQRRKISPAS  120
AAASTSMAVA ANAVTVAVPS AVITVSPANS GDEQVLSSNS SPTATAIAIR QTVLTAAPEI  180
LEENERLRKE NAQLYRELNR LRGLCHNIYN MMSNYAVNPP ESTSGLPDAR TLDFLPASQG  240
ASEHETAAAA AAEDEAVKAE DNGTTPRLFG VSIGVKRFRQ SEDVEGERQT QSQPHESDMK  300
TEPLDSGSAD NVVAREQNIV ADFLAKLAKQ DPLGVHHLPR PPDGATTLLE DDAAGLPQWR  360
FVAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-262511429129Heat shock factor protein 1
5d5v_B6e-262511429129Heat shock factor protein 1
5d5v_D6e-262511429129Heat shock factor protein 1
5hdg_A4e-262511410110Heat shock factor protein 1
5hdn_A4e-262511410110Heat shock factor protein 1
5hdn_B4e-262511410110Heat shock factor protein 1
5hdn_C4e-262511410110Heat shock factor protein 1
5hdn_D4e-262511410110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00432DAPTransfer from AT4G11660Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019150158.10.0PREDICTED: heat stress transcription factor B-2b
RefseqXP_019150159.10.0PREDICTED: heat stress transcription factor B-2b
SwissprotQ9T0D37e-95HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A1S3XXH51e-141A0A1S3XXH5_TOBAC; heat stress transcription factor B-2b-like isoform X1
TrEMBLA0A1U7V7G91e-141A0A1U7V7G9_NICSY; heat stress transcription factor B-2b
STRINGXP_009760921.11e-142(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21822460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.12e-86HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]