PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002050.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GATA
Protein Properties Length: 327aa    MW: 35198.2 Da    PI: 9.2803
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002050.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.73.9e-19184217134
                     GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                              C+ C+ttkTplWR+gp g+k+LCnaCG+++rk +
  Itr_sc002050.1_g00001.1 184 CADCNTTKTPLWRSGPKGPKSLCNACGIRQRKAR 217
                              *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.4E-19178229IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.57E-12179218No hitNo description
Gene3DG3DSA:3.30.50.101.3E-15182217IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.44182214IPR000679Zinc finger, GATA-type
CDDcd002022.22E-13183215No hitNo description
PROSITE patternPS003440184209IPR000679Zinc finger, GATA-type
PfamPF003207.9E-17184217IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MIPAYMTSPF PFDLNYSTAD HYDDDNNNDG DDQNPKLFFT SSSNYQPPPH APSNSSSHLF  60
LNYDPQFYQP PALNANDNWG SYDMEAKKGQ AESGHNKRRK EDEKYENEGE KGAEKVMVMP  120
AKMKLVKKVR SSNMENVSAT KIEDHHQKGP SLVSSSLETD HSSNSSSSNN GGNNGNNVPI  180
VRVCADCNTT KTPLWRSGPK GPKSLCNACG IRQRKARRAM AAAAAAAASA NGGANGTAPS  240
SSPSTLKLKV QKTTAKSNNN YPLKKRCKFV TATAEASAPS SAAAAKNGVE DFLKKLSNSL  300
ALHRVFPQDE KDAAILLMAI SCGLVHG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019150894.11e-124PREDICTED: putative GATA transcription factor 22
TrEMBLA0A1S4BGN54e-51A0A1S4BGN5_TOBAC; putative GATA transcription factor 22
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30972249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.14e-19GATA family protein