![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Itr_sc002027.1_g00009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 257aa MW: 28492.1 Da PI: 8.2766 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.1 | 0.00061 | 4 | 26 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C k F + L H+r+H Itr_sc002027.1_g00009.1 4 FKCKLCLKQFVNGKALGGHMRSH 26 89********************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.53E-7 | 3 | 26 | No hit | No description |
Pfam | PF13912 | 7.8E-9 | 4 | 28 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.616 | 4 | 31 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.059 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.53E-7 | 138 | 165 | No hit | No description |
Pfam | PF13912 | 4.0E-4 | 143 | 165 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.2 | 143 | 165 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.66 | 143 | 170 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 145 | 165 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.99E-5 | 185 | 210 | No hit | No description |
Pfam | PF13912 | 4.9E-11 | 186 | 209 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.08 | 186 | 208 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.575 | 186 | 213 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 188 | 208 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 257 aa Download sequence Send to blast |
MEKFKCKLCL KQFVNGKALG GHMRSHLAVL PLPPKTPPQK QQDSMDGGES TLSLCSSIVR 60 SVDPDPEFVD RESESESTRN PTRRRSKRAR RVFLGEAEEE KEKGKAKKVA ESSSSSSFSD 120 DEEIARCLMT LSQDVWSKTG DKFQCQICCR HFKSSQALGS HRTTHNRGEI QEQKPRNLPA 180 GVKIMHECPF CGKLFGSGQA LGGHKRSHSP TTKTPASSSC SSKLIIDLNL PAPMEDNDEP 240 EEAEVSAVSD EFRRVDK |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019155149.1 | 1e-111 | PREDICTED: zinc finger protein ZAT1-like | ||||
TrEMBL | A0A328DG59 | 9e-69 | A0A328DG59_9ASTE; Uncharacterized protein | ||||
STRING | XP_009591197.1 | 1e-64 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1095 | 24 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G60580.1 | 1e-34 | C2H2-like zinc finger protein |