PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Itr_sc001952.1_g00002.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

LBD

Protein Properties

Length: 199aa MW: 21610.5 Da PI: 4.6076

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001952.1_g00002.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	134.4	4.5e-42	32	131	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +CaaCk+lrr+Ca++Cvlapyfp ++p kf +h++FGasn++k+l++lpe +r da+sslvyeA+ar+rdPvyG++g i +lq+q Itr_sc001952.1_g00002.1 32 PCAACKILRRRCAEKCVLAPYFPPNDPLKFTTAHRVFGASNIIKILQDLPEAQRADAVSSLVYEANARLRDPVYGSAGAICHLQKQ 117 7*********************************************************************************** PP DUF260 87 leqlkaelallkee 100 +++l+a+la++++e Itr_sc001952.1_g00002.1 118 VNELQAQLAVAQAE 131 ********9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.162	31	132	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.1E-42	32	129	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MESSSETTTN SSRSSSSPPP PATPPPVPVV SPCAACKILR RRCAEKCVLA PYFPPNDPLK 60 FTTAHRVFGA SNIIKILQDL PEAQRADAVS SLVYEANARL RDPVYGSAGA ICHLQKQVNE 120 LQAQLAVAQA ELVNIQMQCQ QANLMALIYM ENTAAAKSAP LQQSSFDDDA DLAFLDENNF 180 LGSYFWDQSL SSLDMMSVL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-41	31	134	10	113	LOB family transfactor Ramosa2.1
5ly0_B	4e-41	31	134	10	113	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009610820.1	1e-80	PREDICTED: LOB domain-containing protein 1-like
Refseq	XP_016509518.1	1e-80	PREDICTED: LOB domain-containing protein 1-like
Swissprot	Q9LQR0	2e-66	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A1S4D850	2e-79	A0A1S4D850_TOBAC; LOB domain-containing protein 1-like
STRING	XP_009610820.1	4e-80	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	6e-52	LOB domain-containing protein 1