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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Itr_sc001935.1_g00005.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 323aa MW: 36120.1 Da PI: 6.6928 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Itr_sc001935.1_g00005.1 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 58.5 | 1.1e-18 | 99 | 152 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++++eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k
Itr_sc001935.1_g00005.1 99 KKRRLNTEQVKALEKSFEVGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 152
66789************************************************9 PP
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| 2 | HD-ZIP_I/II | 131.9 | 2.5e-42 | 99 | 189 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87
kkrrl++eqvk+LE+sFe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlE+dye+Lkr++da+k+en++L +++++L
Itr_sc001935.1_g00005.1 99 KKRRLNTEQVKALEKSFEVGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLERDYESLKRQFDAVKAENDALLAHNQKL 184
9************************************************************************************* PP
HD-ZIP_I/II 88 reelk 92
++++
Itr_sc001935.1_g00005.1 185 HAQIV 189
*9986 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 323 aa
Download sequence Send
to blast |
MTSCIGMDFF PTNFMLQTPH HDPNDHHHHH PSTALSPLFP SCTTPPPPQN FHGVVGASSF 60
LGGKRSSMNI CEEALSHGDV QEEVSDEEEG SLQAGENSKK RRLNTEQVKA LEKSFEVGNK 120
LEPERKMQLA RALGLQPRQI AIWFQNRRAR WKTKQLERDY ESLKRQFDAV KAENDALLAH 180
NQKLHAQIVA LKNSSCRESI QPTESINLNK ETEGSCSNSR SENSSAEIMK LEISARSTAA 240
IDSHPTTTTT SSLFPAGMPP AHLFQNNNNN NSSSSSRQSD LIIHHCLKMQ DPSVKEESLS 300
NMFCGGDDHS AGFWPWLDQH HFN
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| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 146 | 154 | RRARWKTKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}. |
| Publications
? help Back to Top |
- Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Ribone PA,Capella M,Chan RL
Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
J. Exp. Bot., 2015. 66(19): p. 5929-43
[PMID:26136262] - Wang X, et al.
Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
Sci China Life Sci, 2018. 61(1): p. 79-87
[PMID:28887625] - Ebrahimian-Motlagh S, et al.
JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
Front Plant Sci, 2017. 8: p. 2118
[PMID:29326734]
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