PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001935.1_g00005.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 323aa    MW: 36120.1 Da    PI: 6.6928
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001935.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-1899152356
                              --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              k++++++eq+++Le+ Fe  +++  e++ +LA+ lgL+ rq+ +WFqNrRa++k
  Itr_sc001935.1_g00005.1  99 KKRRLNTEQVKALEKSFEVGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 152
                              66789************************************************9 PP
2HD-ZIP_I/II131.92.5e-4299189292
              HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                              kkrrl++eqvk+LE+sFe  +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlE+dye+Lkr++da+k+en++L +++++L
  Itr_sc001935.1_g00005.1  99 KKRRLNTEQVKALEKSFEVGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLERDYESLKRQFDAVKAENDALLAHNQKL 184
                              9************************************************************************************* PP

              HD-ZIP_I/II  88 reelk 92 
                              ++++ 
  Itr_sc001935.1_g00005.1 185 HAQIV 189
                              *9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.42E-2090156IPR009057Homeodomain-like
PROSITE profilePS5007117.42794154IPR001356Homeobox domain
SMARTSM003891.2E-1797158IPR001356Homeobox domain
CDDcd000865.62E-1799155No hitNo description
PfamPF000468.3E-1699152IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-19101161IPR009057Homeodomain-like
PRINTSPR000311.4E-5125134IPR000047Helix-turn-helix motif
PROSITE patternPS000270129152IPR017970Homeobox, conserved site
PRINTSPR000311.4E-5134150IPR000047Helix-turn-helix motif
PfamPF021834.3E-16154193IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MTSCIGMDFF PTNFMLQTPH HDPNDHHHHH PSTALSPLFP SCTTPPPPQN FHGVVGASSF  60
LGGKRSSMNI CEEALSHGDV QEEVSDEEEG SLQAGENSKK RRLNTEQVKA LEKSFEVGNK  120
LEPERKMQLA RALGLQPRQI AIWFQNRRAR WKTKQLERDY ESLKRQFDAV KAENDALLAH  180
NQKLHAQIVA LKNSSCRESI QPTESINLNK ETEGSCSNSR SENSSAEIMK LEISARSTAA  240
IDSHPTTTTT SSLFPAGMPP AHLFQNNNNN NSSSSSRQSD LIIHHCLKMQ DPSVKEESLS  300
NMFCGGDDHS AGFWPWLDQH HFN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146154RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU1715660.0GU171566.1 Ipomoea batatas microsatellite Stv_Ipb_205 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019150677.10.0PREDICTED: homeobox-leucine zipper protein ATHB-13-like
SwissprotQ8LC038e-95ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBLA0A0D2TXK61e-111A0A0D2TXK6_GOSRA; Uncharacterized protein
TrEMBLA0A1U8KTH01e-111A0A1U8KTH0_GOSHI; homeobox-leucine zipper protein ATHB-13-like
STRINGGorai.013G083600.11e-112(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8482498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.19e-79HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Wang X, et al.
    Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
    Sci China Life Sci, 2018. 61(1): p. 79-87
    [PMID:28887625]
  4. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]