PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001927.1_g00011.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family B3
Protein Properties Length: 292aa    MW: 33528.4 Da    PI: 9.4145
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001927.1_g00011.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.14.3e-104781898
                             --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                       B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                             +p + +++++ +   s  +++  +sg +W v +  +k++++ ++ +G ++F ++n +  +  ++Fk++++s+f  +v++f+
  Itr_sc001927.1_g00011.1  4 IPGELIQKYKDE--LSDLVKFCLPSGGEWVVHF--KKNKKMAWFDDGFESFMEDNSIGINYLLLFKYTKDSRF--NVHIFD 78
                             778888888644..778999999**********..********************************999999..999997 PP
2B352.87.4e-17189277596
                              -..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
                       B3   5 ltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                              lt s+vl+ + +++  +f+++   g   +++ + lede+g++W vk+++r ++ ++ l+ GW+ Fv+ ++L +g ++vF+l+++  
  Itr_sc001927.1_g00011.1 189 LTESNVLRIS-MYVAADFVRSLlPG---KPRSIYLEDENGKRWIVKCRFRSRRVSH-LSYGWRLFVQHKKLVAGNVCVFELVKDsP 269
                              5667777776.99999999988533...4456***************888888777.777**********************9988 PP

                              EE..EEEE CS
                       B3  89 efelvvkv 96 
                                ++v+kv
  Itr_sc001927.1_g00011.1 270 ADKPVLKV 277
                              88888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.968180IPR003340B3 DNA binding domain
SMARTSM010190.092180IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-14279IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.86E-13379IPR015300DNA-binding pseudobarrel domain
PfamPF023623.0E-8378IPR003340B3 DNA binding domain
SuperFamilySSF1019363.53E-19181281IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-20181280IPR015300DNA-binding pseudobarrel domain
CDDcd100171.23E-16183281No hitNo description
PROSITE profilePS5086312.323184283IPR003340B3 DNA binding domain
SMARTSM010192.0E-10186283IPR003340B3 DNA binding domain
PfamPF023623.6E-14189277IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MQRIPGELIQ KYKDELSDLV KFCLPSGGEW VVHFKKNKKM AWFDDGFESF MEDNSIGINY  60
LLLFKYTKDS RFNVHIFDLT ATEIDYPCNS HGAQKRCDSV KGILGGGGDC SSGDDGIDQS  120
IFGSGMKRQR TTSLKEQRMY SSYESKVRKV KERSVILDGS DDANKHNIPK REKIEGNVVF  180
QNPHVAVRLT ESNVLRISMY VAADFVRSLL PGKPRSIYLE DENGKRWIVK CRFRSRRVSH  240
LSYGWRLFVQ HKKLVAGNVC VFELVKDSPA DKPVLKVYIF PSWEDLPQIF SH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019172930.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85571529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-18B3 family protein