PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001903.1_g00013.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 546aa    MW: 62531 Da    PI: 9.3955
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001903.1_g00013.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.37.5e-08340378344
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                              +W++eE  l+++ vk+ G++ Wk+ a ++g  R + ++++ w
  Itr_sc001903.1_g00013.1 340 KWSEEEKALILEHVKLNGNK-WKSLADKLG--RYGGNVRETW 378
                              8*******************.********8..6666666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007177264335IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-5268354IPR009057Homeodomain-like
PROSITE profilePS5129410.549334386IPR017930Myb domain
SMARTSM007170.005337384IPR001005SANT/Myb domain
SuperFamilySSF466898.28E-10338398IPR009057Homeodomain-like
PfamPF139211.6E-11341399No hitNo description
Gene3DG3DSA:1.10.10.601.9E-11355392IPR009057Homeodomain-like
PROSITE profilePS500907.642383451IPR017877Myb-like domain
SMARTSM007178.1E-4387453IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-7393435IPR009057Homeodomain-like
SuperFamilySSF466897.52E-6431506IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.600.001436503IPR009057Homeodomain-like
PROSITE profilePS500906.655453506IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MVMAVEDEVV GALKKSEKSR KSKKRKERIN DKLAANHVYI VKDVGVEGDK SFEEETLTKM  60
KSDNEGVERM KKKKKAAGDN KMGALMEDTN GITVEKAEKI KREREVQSNN NESHAVSQDT  120
AHNVSVDNRG YVNSTATEML ESKRKHEKKA PTITDGCTKG KMEKVKRKKK QNKKEKGEDN  180
QGSVDVATGL TCAEGIADFS VNETQASGVG NDNISRKQAK DSSNDPKRKN SKKEVRFSNE  240
LKVFPESIVP ESEKGQNKVV ELIRGKWFSK IEDEIVKETV LKYIEVHNLG EEGLDMVLNC  300
RSHPEVKHCW KVIGAAIPYR PYLSVYQRAQ TLFRRSENRK WSEEEKALIL EHVKLNGNKW  360
KSLADKLGRY GGNVRETWRR ICLPNLKKGP WSQDECQNLF DLVNTDLQLR VFEEKRSRHG  420
MLRDNICWTA ISNKLSTRNN PQCCRKWYYN LTSPMVAEGT WSDSDDYRLI GELYTLDATC  480
IENVDWDNLL GHRSGELCLK RWKQMVLHIG NHGNKPFSEQ VEILAKRYCP SLIEVREAWD  540
NKPVVP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11926RKSKKRKE
26773ERMKKKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019173949.10.0PREDICTED: cyclin-D-binding Myb-like transcription factor 1
RefseqXP_019173950.10.0PREDICTED: cyclin-D-binding Myb-like transcription factor 1
TrEMBLA0A484MYC61e-169A0A484MYC6_9ASTE; Uncharacterized protein
STRINGXP_009760244.11e-155(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10291429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-119MYB_related family protein