PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Itr_sc001877.1_g00011.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 343aa MW: 37573 Da PI: 8.4592

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001877.1_g00011.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.7	0.00024	234	271	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ ++++ L +l+ + +K + a++L++A+ YI+ L Itr_sc001877.1_g00011.1 234 RKEKLGDRIAALHRLVAPF-----GKTDTASVLTEAIGYIQFL 271 6678889999999999998.....8****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.249	222	271	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.79E-10	232	284	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.9E-7	232	279	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.38E-5	232	276	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MESSNLYHHH HQLQEQCFGY GLSSLLDWNP SLSIDGDDEY YKRHSDGLMF PVLSPSLSSA 60 ADAIPAAIQQ QYYHQPTTNV VPQHENYYSE QTGISMSSSS HCNIIPVNSD YVVKREQHNS 120 FDLNHNVFLG ASGAGRQIPI PAPRFGTMNS SNSSPSPSSL VSSISAAYTE FPGNNTTSYF 180 GFANIHEPIH SPSSSSNKVS KAKRVSGAAM ESHQQPKKPR IGSQRSSCPV LKVRKEKLGD 240 RIAALHRLVA PFGKTDTASV LTEAIGYIQF LHDQIQALSL PYMKSSGAGS HHPHRTSRVQ 300 APNMKNEEGK TTLDLKSRGL CLVPLSLTSY ITSCQGIYMA THN

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MESSNLYHHH HQLQEQCFGY GLSSLLDWNP SLSIDGDDEY YKRHSDGLMF PVLSPSLSSA  60
ADAIPAAIQQ QYYHQPTTNV VPQHENYYSE QTGISMSSSS HCNIIPVNSD YVVKREQHNS  120
FDLNHNVFLG ASGAGRQIPI PAPRFGTMNS SNSSPSPSSL VSSISAAYTE FPGNNTTSYF  180
GFANIHEPIH SPSSSSNKVS KAKRVSGAAM ESHQQPKKPR IGSQRSSCPV LKVRKEKLGD  240
RIAALHRLVA PFGKTDTASV LTEAIGYIQF LHDQIQALSL PYMKSSGAGS HHPHRTSRVQ  300
APNMKNEEGK TTLDLKSRGL CLVPLSLTSY ITSCQGIYMA THN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019172407.1	1e-163	PREDICTED: transcription factor bHLH68-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13443	12	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	2e-37	bHLH family protein