PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001869.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 535aa    MW: 61193.3 Da    PI: 9.0766
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001869.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.53.6e-09329369346
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              +WT+eE  l ++ vk++G++ Wk+ a+++g  R + ++k+ w+ 
  Itr_sc001869.1_g00001.1 329 KWTEEEKALVLQHVKLHGNE-WKSLAEELG--RHRFHVKDTWRR 369
                              8*******************.********8..999999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.011253324IPR001005SANT/Myb domain
PROSITE profilePS512949.133319375IPR017930Myb domain
SMARTSM007170.0013326373IPR001005SANT/Myb domain
SuperFamilySSF466894.41E-9327388IPR009057Homeodomain-like
CDDcd001670.00238329357No hitNo description
Gene3DG3DSA:1.10.10.608.1E-10329380IPR009057Homeodomain-like
PfamPF139217.9E-13330388No hitNo description
PROSITE profilePS500907.213372440IPR017877Myb-like domain
SMARTSM007171.9376442IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-6381441IPR009057Homeodomain-like
SuperFamilySSF466897.27E-5420495IPR009057Homeodomain-like
PROSITE profilePS500907.166442495IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MVMAAEDEVV ARKSKKRKER NNDMLAANPV DIVKDVGVEG DKSFEEESLM KKKSDNEGVE  60
RMKKKKKRAG DKKGGALMED TNGITVEKAK KRKRKREVES NSNELHAVSQ DTANDVSVDN  120
GSYVNSTATE IHESKKKHKK KAGKISDGCT EGEVEKVKRK KKKNKKKKGE VDQDVAIGLA  180
CTDGIADFSV NETQASGVGN DNNSRNQVKD SSKDPKLKNS QKKVRFSDEL EVFPESNVPE  240
SGNDENEEVE LIRGKRFSKI EDEKIKEAVY KYIEVHNLGE EGLDMVLNSR SHPKVKNCWK  300
EIGAAIPNRP HVAVYYRAQI IFRRAENPKW TEEEKALVLQ HVKLHGNEWK SLAEELGRHR  360
FHVKDTWRRI KLPKMKAGHW SQDEYQNLFD LVNTDLQVRI TEEKKSKHGM LRDNICWTAI  420
SDKLSTRNGP NCCLKWYKQL TSPMVAEGIW SDSDDYRLIG ALYNLDETCI ENVDWDNLVE  480
HRSGEICLKR WRQMVLHIGN HGNKPFSEQV EVLAKRYCPS LIEARETWDS KPVVP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11118RKSKKRKE
25965ERMKKKK
36272KKKKKRAGDKK
48994KKRKRK
58995KKRKRKR
6138160KKKAGKISDGCTEGEVEKVKRKK
7157165KRKKKKNKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019158657.10.0PREDICTED: cyclin-D-binding Myb-like transcription factor 1
TrEMBLA0A484MYC60.0A0A484MYC6_9ASTE; Uncharacterized protein
STRINGXP_009605412.11e-169(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10291429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-124MYB_related family protein