PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001868.1_g00009.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 100aa    MW: 11178.7 Da    PI: 9.8271
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001868.1_g00009.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.81.6e-0723591854
                             HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                             +  ++L++llP++ + +s K s   +L+++++YI++L
  Itr_sc001868.1_g00009.1 23 QLVSKLQQLLPELRSRRSAKASAGKVLQETCNYIRNL 59
                             56689*******779********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.9E-8377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.372559IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.46E-81979IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.8E-52059IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
MSSRRSRQSS SASSRISDDQ IIQLVSKLQQ LLPELRSRRS AKASAGKVLQ ETCNYIRNLH  60
KEVDDLSDRL SQLLSTIDAD TPEAAIIRSL IIYLLSGLNH
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016559055.13e-50PREDICTED: transcription factor PRE6-like
SwissprotQ9LJX11e-39PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A1U8FK007e-49A0A1U8FK00_CAPAN; Transcription factor PRE5
TrEMBLA0A2G2XD167e-49A0A2G2XD16_CAPBA; Transcription factor PRE5
TrEMBLA0A2G3A6457e-49A0A2G3A645_CAPAN; transcription factor PRE6-like
STRINGPGSC0003DMT4000177488e-49(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35324161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.12e-24bHLH family protein