 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Itr_sc001863.1_g00014.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
| Family |
TALE |
| Protein Properties |
Length: 194aa MW: 22680.7 Da PI: 6.684 |
| Description |
TALE family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Itr_sc001863.1_g00014.1 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 31.3 | 3.4e-10 | 85 | 120 | 20 | 55 |
HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
Homeobox 20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55
+k +yps++e+ LA+++gL+++q+ +WF N+R ++
Itr_sc001863.1_g00014.1 85 YKWPYPSETEKVALAESTGLDQKQINNWFINQRKRH 120
4679*****************************885 PP
|
| 2 | ELK | 39 | 1.6e-13 | 40 | 61 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22
ELK++LlrKYsgyL+sLkqE+s
Itr_sc001863.1_g00014.1 40 ELKNHLLRKYSGYLSSLKQELS 61
9*******************97 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 194 aa
Download sequence Send
to blast |
MIGEWTDDKC EGVGSSEDDQ DNSGGETELP EIDPRAEDRE LKNHLLRKYS GYLSSLKQEL 60
SKKKKKGKLP KEARQKLLNW WELHYKWPYP SETEKVALAE STGLDQKQIN NWFINQRKRH 120
WKPSEDMQFM VMDGLHPQNA ALYMDGHYMG DGPYRLDRLE IYAYTMPFGR LAGNLERGEL 180
ARLTSRLSLI CNLW
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probably binds to the DNA sequence 5'-TGAC-3'. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AB283029 | 0.0 | AB283029.1 Ipomoea batatas Ibkn3 mRNA for class-I knotted1-like homeobox protein IBKN3, complete cds. |
