PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001859.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NAC
Protein Properties Length: 343aa    MW: 38149.1 Da    PI: 8.3094
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001859.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM128.35.9e-40191521128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskr.dkkyatgkrknratksgyWk 84 
                              lppGfrF+Pt++e+v +yL++k+ + +l++ +vi+e+ +i++++Pw+Lp  +  e+++ yfFs++ ++ky++g++++r+ ++gyWk
  Itr_sc001859.1_g00003.1  19 LPPGFRFQPTEQEIVFQYLQRKTFSLSLPA-SVIPELpNICRYDPWNLPGDM--EQEDRYFFSSKeATKYPNGNQTSRVSSNGYWK 101
                              79****************************.89***99***********766..5567788876516799**************** PP

                      NAM  85 .atgkdkevlskkgel......vglkktLvfykgrapkgektdWvmheyrl 128
                               ++ ++k++++ +++       +g+kktLvfy g+ p+g+kt+W+mh+yrl
  Itr_sc001859.1_g00003.1 102 pSSSEEKHITCPGKSSssipmiMGMKKTLVFYYGKPPHGSKTNWIMHQYRL 152
                              4445578888875444678899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.19E-4116195IPR003441NAC domain
PROSITE profilePS5100542.85819195IPR003441NAC domain
PfamPF023651.1E-2220152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MDGRLRLHFV RDDGEVVKLP PGFRFQPTEQ EIVFQYLQRK TFSLSLPASV IPELPNICRY  60
DPWNLPGDME QEDRYFFSSK EATKYPNGNQ TSRVSSNGYW KPSSSEEKHI TCPGKSSSSI  120
PMIMGMKKTL VFYYGKPPHG SKTNWIMHQY RLVAISPAGN PPPPPYFRHA MKKDHSQGSL  180
MQQIGNLVIC HVFQKKRVNG KAGGESAEVC EDNINISINE DENVDRYNLM MMRDGLSSSS  240
CSDDGDSCVS SCSSSRVLND EVSSSYSCGT LGYGHLKFRR TPAKIPASEA LSAAVAFGAI  300
SVELNGDGEQ FSISVRRRWR PLVSPSPFDG DATFGITKKS CTN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-311715315143NO APICAL MERISTEM PROTEIN
1ut4_B1e-311715315143NO APICAL MERISTEM PROTEIN
1ut7_A1e-311715315143NO APICAL MERISTEM PROTEIN
1ut7_B1e-311715315143NO APICAL MERISTEM PROTEIN
4dul_A1e-311715315143NAC domain-containing protein 19
4dul_B1e-311715315143NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019160703.11e-162PREDICTED: NAC domain-containing protein 83-like
TrEMBLA0A2Z5HVJ70.0A0A2Z5HVJ7_IPOBA; NAC12 protein
STRINGXP_009597132.16e-67(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13872377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.16e-54NAC domain containing protein 83