PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001826.1_g00002.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 366aa MW: 39789.7 Da PI: 8.5909

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001826.1_g00002.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.7	5e-09	189	236	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k + Ka +L + ++Y++sLq Itr_sc001826.1_g00002.1 189 SHSLAERARREKISKKMKCLQDLVPGC----NKVVGKAGMLDEIINYVQSLQ 236 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.57E-16	183	254	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.33E-7	183	240	No hit	No description
Gene3D	G3DSA:4.10.280.10	8.8E-18	185	254	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.104	185	235	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-6	189	236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.2E-10	191	241	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MLRCAQSSPE NNNVSYSVAD LSVLERQRAI FQRLYHPIIH DNHLAGAGAP APENPFPALL 60 DGNLTNFASL WHAEENSPNA AVVDVHGRET GKLSRSSSSI TAAAVPTSSK ANGTATSTRK 120 RKAEEDKKWE GETGDVQSEI TVKCERETSG SSASKENKKS SGSGSGSGDD VQKSNYIHVR 180 ARRGQATDSH SLAERARREK ISKKMKCLQD LVPGCNKVVG KAGMLDEIIN YVQSLQKQVE 240 FLSMKLAALN PRLEFNMDNL FPKELPAYMG SFPAAAMPLE AVNAAFLHYN PLQQLATATS 300 RGGSATMETD MPRSDVVQQM LPHHQRKENN PSESIPELYL DSSYFPVSSG TLRPTLLLPA 360 AARLGK

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MLRCAQSSPE NNNVSYSVAD LSVLERQRAI FQRLYHPIIH DNHLAGAGAP APENPFPALL  60
DGNLTNFASL WHAEENSPNA AVVDVHGRET GKLSRSSSSI TAAAVPTSSK ANGTATSTRK  120
RKAEEDKKWE GETGDVQSEI TVKCERETSG SSASKENKKS SGSGSGSGDD VQKSNYIHVR  180
ARRGQATDSH SLAERARREK ISKKMKCLQD LVPGCNKVVG KAGMLDEIIN YVQSLQKQVE  240
FLSMKLAALN PRLEFNMDNL FPKELPAYMG SFPAAAMPLE AVNAAFLHYN PLQQLATATS  300
RGGSATMETD MPRSDVVQQM LPHHQRKENN PSESIPELYL DSSYFPVSSG TLRPTLLLPA  360
AARLGK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019172934.1	0.0	PREDICTED: transcription factor BEE 2-like isoform X3
TrEMBL	A0A328DLK1	4e-83	A0A328DLK1_9ASTE; Uncharacterized protein
STRING	XP_009803168.1	4e-72	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4000	21	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34530.1	2e-55	cryptochrome-interacting basic-helix-loop-helix 1