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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc001811.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | B3 | ||||||||
Protein Properties | Length: 117aa MW: 13690.1 Da PI: 4.5617 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 42.8 | 9.5e-14 | 8 | 73 | 30 | 99 |
..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 30 keesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 k + tl+ ++g +W+v + r ++ +++++GW+ F ++n+L+ g++v ++ g + f vk+f+k Itr_sc001811.1_g00005.1 8 KGLGEIATLRRPTGHEWRVHI--RTERDDTFFSDGWETFYEDNDLDIGEVVFYTYLGGMHF--DVKIFNK 73 34666799*************..999999**************************999999..9999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.872 | 1 | 74 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 4.12E-16 | 2 | 75 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.50E-11 | 2 | 72 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 3.8E-17 | 2 | 74 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 8.1E-11 | 7 | 73 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 117 aa Download sequence Send to blast |
MFVKHLGKGL GEIATLRRPT GHEWRVHIRT ERDDTFFSDG WETFYEDNDL DIGEVVFYTY 60 LGGMHFDVKI FNKDGLEKVW DTYAIQNSNE ESDHDNPSTT PGLSYHEMFP NKEDKIV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019179009.1 | 2e-55 | PREDICTED: B3 domain-containing protein Os01g0723500-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3779 | 22 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06220.1 | 9e-12 | B3 family protein |