PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001788.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family AP2
Protein Properties Length: 481aa    MW: 53637.9 Da    PI: 5.8442
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001788.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.31.6e-17158207155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              s+y+GV++++++grW+++I+d      + k+++lg f+ta+ Aa+a+++a+ k++g
  Itr_sc001788.1_g00002.1 158 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTADAAARAYDRAAIKFRG 207
                              78*******************......55************************997 PP
2AP241.24.1e-13250300155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  Itr_sc001788.1_g00002.1 250 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 300
                              89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.23E-16158216IPR016177DNA-binding domain
PfamPF008472.4E-9158207IPR001471AP2/ERF domain
SMARTSM003802.9E-32159221IPR001471AP2/ERF domain
CDDcd000183.80E-11159214No hitNo description
PROSITE profilePS5103217.873159215IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-17159215IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-17250309IPR016177DNA-binding domain
PfamPF008471.3E-8250300IPR001471AP2/ERF domain
CDDcd000181.67E-25250310No hitNo description
PROSITE profilePS5103215.527251308IPR001471AP2/ERF domain
SMARTSM003801.8E-32251314IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-15251308IPR001471AP2/ERF domain
PRINTSPR003675.1E-6252263IPR001471AP2/ERF domain
PRINTSPR003675.1E-6290310IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MLDLNLSVVY DESIFEKRPE GSGADESGTS NSSMLNAEAS SNAGDDDTCS TRAGDVVPFN  60
FDILKVGSRN EDDDGDDENR QAALPEFVTR QLFPVSEGAW NTGQTSGRQD WAMDLSFRQA  120
EMRMVEQQQQ QQQQQQQPPP QPQQQVKKSR RGPRSRSSQY RGVTFYRRTG RWESHIWDCG  180
KQVYLGGFDT ADAAARAYDR AAIKFRGVDA DINFHLSDYE EDMKQMENLS KEEFVHMLRR  240
QSTGFSRGSS KYRGVTLHKC GRWEARMGQF LGKKYIYLGL FDSEVEAARA YDKAAIKCNG  300
REAVTNFEPS TYDGGTAFDP HNEGSQHDLD LNLGMTSSSP NKNMDKCDQT TIGSSHLNRQ  360
PFTSEQPQLL NGFYSHFLPN YQQQIASEKR MGIGGSSQGS PNWMREMRYG TTPVAMFSTA  420
AASSGFSTQA TNDCTTAFTS ALAGPYSAAF SSPPSMNLSF ASYPTASTNT SQHYYHIRPP  480
P
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019167603.10.0PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X1
SwissprotB8AXC31e-104AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A314KQ380.0A0A314KQ38_NICAT; Ethylene-responsive transcription factor rap2-7
STRINGXP_009784819.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-108related to AP2.7