PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc001767.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | ERF | ||||||||
Protein Properties | Length: 226aa MW: 24450 Da PI: 5.4403 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.7 | 7.7e-20 | 57 | 106 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++GVr++ +g+WvAeIr+p + r +r++lg+f ta eAa+a++ a+++l+g Itr_sc001767.1_g00004.1 57 TFRGVRQRT-WGKWVAEIREP---N-RgARVWLGTFNTALEAARAYDDAARRLYG 106 69****999.**********8...3.35*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.02E-17 | 56 | 112 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.3E-30 | 57 | 113 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.219 | 57 | 114 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-20 | 57 | 114 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.9E-33 | 57 | 120 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.9E-13 | 58 | 106 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-10 | 58 | 69 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-10 | 80 | 96 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MEESSGDSTI NVRVPVGKND VVPGKPANTG PVKKSNVGRS RKGCMRGKGG PENALCTFRG 60 VRQRTWGKWV AEIREPNRGA RVWLGTFNTA LEAARAYDDA ARRLYGPSAK LNLLDDTSSL 120 SSSPGGGGGG GFTIGDEHYL SSSPGSSATA TSEMSEGKEW YAEECSVLDE ASVFRDRDGK 180 YLLWETPAPS LLDEENNRGW PEFPKDNNGF HCADGSLVTR ETYAYM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-15 | 58 | 113 | 6 | 62 | ATERF1 |
3gcc_A | 5e-15 | 58 | 113 | 6 | 62 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00519 | DAP | Transfer from AT5G18450 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108143 | 1e-47 | AK108143.1 Oryza sativa Japonica Group cDNA clone:002-139-E11, full insert sequence. | |||
GenBank | AP004623 | 1e-47 | AP004623.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0705A05. | |||
GenBank | AP005411 | 1e-47 | AP005411.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0044E16. | |||
GenBank | AP014964 | 1e-47 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY339375 | 1e-47 | AY339375.1 Oryza sativa (japonica cultivar-group) Ap22 mRNA, complete cds. | |||
GenBank | CP012616 | 1e-47 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019152457.1 | 1e-122 | PREDICTED: dehydration-responsive element-binding protein 2D-like | ||||
TrEMBL | A0A328D7I3 | 1e-71 | A0A328D7I3_9ASTE; Uncharacterized protein | ||||
STRING | XP_009630729.1 | 1e-53 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3155 | 22 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18450.1 | 2e-35 | ERF family protein |