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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc001766.1_g00011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | YABBY | ||||||||
Protein Properties | Length: 234aa MW: 25774.2 Da PI: 7.6996 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 228.3 | 1.9e-70 | 18 | 190 | 4 | 169 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaae.shldeslkee...lleelkveeenlksn 85 ss+q+Cyv+Cn C+t+lavsvP tslfk+vtvrCGhCt+ll vn++ + + +hl+ + ++ +l+e +++ n+ ++ Itr_sc001766.1_g00011.1 18 PPSSDQLCYVHCNICDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMRGLILPSPPNhHHLHSFFSPShntILDEISNSNPNFLMM 103 5789****************************************999998876665505555555554667888888888888888 PP YABBY 86 vekeesastsvssekl..senedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihf 168 ++++++a +s + + l +e+p++pp ++rPPekrqrvPsaynrfikeeiqrika+nPdi+hreafsaaaknWahfP+i Itr_sc001766.1_g00011.1 104 NVHHQAAAASSAEFVLppRAAGFDELPHPPPlINRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDITHREAFSAAAKNWAHFPHIQL 189 8888888888888888655666799***99999***************************************************87 PP YABBY 169 g 169 g Itr_sc001766.1_g00011.1 190 G 190 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 7.2E-69 | 20 | 190 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 4.97E-8 | 132 | 185 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.8E-4 | 140 | 184 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MSFSSSSSSS LDHRSHLPPS SDQLCYVHCN ICDTVLAVSV PCTSLFKTVT VRCGHCTNLL 60 PVNMRGLILP SPPNHHHLHS FFSPSHNTIL DEISNSNPNF LMMNVHHQAA AASSAEFVLP 120 PRAAGFDELP HPPPLINRPP EKRQRVPSAY NRFIKEEIQR IKAGNPDITH REAFSAAAKN 180 WAHFPHIQLG IMPDHQATVK KSNVRPQDGE DVLIKDGLFA SADVGISPYG ISPY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. Regulates the initiation of embryonic shoot apical meristem (SAM) development (PubMed:10323860, PubMed:10331982, PubMed:10457020, PubMed:11812777, PubMed:12417699, PubMed:9878633, Ref.3, Ref.6, PubMed:19837869). Required during flower formation and development, particularly for the patterning of floral organs. Positive regulator of class B (AP3 and PI) activity in whorls 2 and 3. Negative regulator of class B activity in whorl 1 and of SUP activity in whorl 3. Interacts with class A proteins (AP1, AP2 and LUG) to repress class C (AG) activity in whorls 1 and 2. Contributes to the repression of KNOX genes (STM, KNAT1/BP and KNAT2) to avoid ectopic meristems. Binds DNA without sequence specificity. In vitro, can compete and displace the AP1 protein binding to DNA containing CArG box (PubMed:10323860, PubMed:10331982, PubMed:10457020, PubMed:11812777, PubMed:12417699, PubMed:9878633, Ref.3, Ref.6). {ECO:0000269|PubMed:10323860, ECO:0000269|PubMed:10331982, ECO:0000269|PubMed:10457020, ECO:0000269|PubMed:11812777, ECO:0000269|PubMed:12417699, ECO:0000269|PubMed:19837869, ECO:0000269|PubMed:9878633, ECO:0000269|Ref.3, ECO:0000269|Ref.6}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019171376.1 | 1e-147 | PREDICTED: protein YABBY 4-like | ||||
Refseq | XP_019171377.1 | 1e-147 | PREDICTED: protein YABBY 4-like | ||||
Swissprot | O22152 | 2e-71 | YAB1_ARATH; Axial regulator YABBY 1 | ||||
TrEMBL | A0A1R3K548 | 1e-109 | A0A1R3K548_COCAP; YABBY protein | ||||
STRING | EOY24425 | 1e-109 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA381 | 24 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00180.1 | 3e-67 | YABBY family protein |