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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc001764.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | MYB_related | ||||||||
Protein Properties | Length: 1593aa MW: 178153 Da PI: 8.8074 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.3 | 4.1e-09 | 158 | 198 | 2 | 42 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcks 42 ++W++eE+ ++ + ++lG+g+W+ I++ + ++Rt+ q+ s Itr_sc001764.1_g00003.1 158 LAWSEEEHRVFLVGLEKLGKGDWRGISKQFVTTRTPAQLAS 198 68***********************************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50158 | 9.191 | 3 | 18 | IPR001878 | Zinc finger, CCHC-type |
SMART | SM00343 | 0.067 | 4 | 20 | IPR001878 | Zinc finger, CCHC-type |
SMART | SM00717 | 9.8E-5 | 156 | 206 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.26E-8 | 158 | 204 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.00E-7 | 159 | 206 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.9E-8 | 159 | 199 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.3E-6 | 159 | 198 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.47 | 160 | 204 | IPR017877 | Myb-like domain |
Pfam | PF14244 | 1.9E-16 | 280 | 326 | IPR029472 | Gag-polypeptide of LTR copia-type |
Pfam | PF14223 | 2.6E-8 | 336 | 483 | No hit | No description |
SMART | SM00343 | 2.2 | 540 | 556 | IPR001878 | Zinc finger, CCHC-type |
Pfam | PF13976 | 2.2E-7 | 764 | 836 | IPR025724 | GAG-pre-integrase domain |
PROSITE profile | PS50994 | 17.587 | 838 | 1010 | IPR001584 | Integrase, catalytic core |
Gene3D | G3DSA:3.30.420.10 | 2.2E-26 | 846 | 1002 | IPR012337 | Ribonuclease H-like domain |
SuperFamily | SSF53098 | 3.49E-38 | 847 | 1004 | IPR012337 | Ribonuclease H-like domain |
Pfam | PF00665 | 1.1E-19 | 852 | 960 | IPR001584 | Integrase, catalytic core |
Pfam | PF07727 | 5.1E-81 | 1131 | 1345 | IPR013103 | Reverse transcriptase, RNA-dependent DNA polymerase |
SuperFamily | SSF56672 | 3.56E-31 | 1134 | 1325 | No hit | No description |
SuperFamily | SSF56672 | 3.56E-31 | 1355 | 1536 | No hit | No description |
CDD | cd09272 | 3.07E-71 | 1430 | 1569 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0015074 | Biological Process | DNA integration | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1593 aa Download sequence Send to blast |
MVRKCSNCGR AGHNSRTCNN SCINHHHESK SSTSCSHTIS IKLFGVKLGI SQSSSSPTNI 60 LSSSSSPLTP AASLAAIRKS FSFECLSSPT ITNRGGTAHS GYLSDGLTTR NHHNKKGWTE 120 VVKGQVQHHV TKELLDKAEA VKGQVQHHVA RGLLGEGLAW SEEEHRVFLV GLEKLGKGDW 180 RGISKQFVTT RTPAQLASCY SYFTNHNELN ISFLSKALSA LLASYFSYFI MVSERYRSYA 240 AAVMMEEDGH GIEAENGGTS SNQTATNQHN DQFDDPFFVH ITENPNVSLV SPLLSELNYS 300 SWSRSMKIAL EVKNKFGFVN GSIPSPEEND PKFASWRRCN RIVSSWILRS VNPSIADGVM 360 YFDTASEIWS ALHKRYSQSD PHRISELQNE IYRNVQGNLT VNEYFTKSNA MWQQLNVLRP 420 LLLCECTPRC TCTLLMRMQK EREEDHIIRF LEGLNEEYET VKSGVLVMDP IPDMERVLNM 480 TLKLERKIKG SINQRSNEFT QANAIQNFPN QSTEEQSVVA VSALNNRKKF TNTGGRNVPK 540 CTYCGMLGHT IEKCFKKHGY PPGWVAGYKS KNKQFQDAPQ TSSASVNQVG DIGLSSDQFQ 600 RLVSILQNQN KGSQATSNAV MTVANSGIKS DFKDVEGNQN EGNLIPNLHI NAVLNLNTTW 660 ILDSGATDHI TCSLGYFETY HKIQGISVKL PNEEAVNVNC VGQIRLNENI VLENVLYIPS 720 FTFNIVSVSK LTKQTGCKLV LEADSCNIQG PLGKVDGFAK ERNGLYLISQ PPVVKMKIQS 780 VNKSANIQCN SLIAELWHNR LGHYPVNKIT SLNGIKSDFC YKQSAFVCDA CHLAKHKRSA 840 FPVSISRAEN CFDLIHMDVW GPFAVASLKG EHYFLTIVDD CSRFTWLHLM KTKSEVKGIF 900 QNFYNYVHTQ FTAKIKVVRT DNGSEFLMNS FFNEKGIVHQ KSCVYTPQQN GVAERKHQHV 960 LNVARALRFQ SGLPIKFWGH CVLHASYIIN RLPSDVNGGH APFELLTGKA VDYDQFKSFG 1020 CLCYGATVAQ GRNKFQPRAL RCVFLGFPAN VKGYILYDIT NSTVFVSRDV KFQEQIYPFK 1080 GQGPGVTAEF NKDERVIPSL PLVPTSVETD SFLEPVSRSG SEILAEEPVS RSGSVERYKA 1140 RLVAKGYTQQ LGVDYIETFS PVARMTTIKT FLAVAVAKGW DIQQLDINNA FLHGDLEEEV 1200 YMVLPPGFKS DRPNQVCKLL RSLYGLKQAS RQWNAKLTKF LQNNGFQQST ADPSLFTKTS 1260 QHSFMALLVY VDDILVAGTD NTQITKLKQL LDTSFRIKDL GKLNYFLGIE ASRNSSGLNL 1320 CQKKYTLEIL QENGFLDAKP AKTPCVPGQR LTHTDGMLLD RPDTFRRLVG KLMYLTNTRP 1380 DICYAVQQLS QFVDKPRDTH LVAAHRVLRY LKGAPGKGLF YDSKSQIKLQ GFSDSDWATC 1440 AETRKSITGY CVYLGESLIS WKTKKQATVS RSSSEAEYRA LASTVCEIQW LLYLLADLKA 1500 DSSIPIPLFC DNNSAVAIGE NYVFHERTKH IEIDCHVVRQ KVHEGVIKLL SIPSHKQIAD 1560 GFTKALTTPL FDTFHSKLGL QDLHAPAYGG MMK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019166977.1 | 0.0 | PREDICTED: uncharacterized protein LOC109162749 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2 | 3 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56840.1 | 3e-20 | MYB_related family protein |