PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001746.1_g00005.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Trihelix

Protein Properties

Length: 401aa MW: 44892.8 Da PI: 4.8306

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001746.1_g00005.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	78.8	7.8e-25	287	370	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k+ev+aLi++r +++++++g k+ Weev++ ++ g++r+p +Ckekwen+nk+ykk++++ k+ ++ ++cpyf++l+ Itr_sc001746.1_g00005.1 287 RWPKSEVQALITVRLALDDKFQNG-PKGSIWEEVAAGLATMGYTRTPRKCKEKWENINKYYKKMTKSVKSC-PKLYKSCPYFRELD 370 8********************9.99**************************************96.777789***997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.491	280	343	IPR017877	Myb-like domain
SMART	SM00717	0.0077	284	345	IPR001005	SANT/Myb domain
Pfam	PF13837	2.5E-20	286	370	No hit	No description
CDD	cd12203	6.41E-22	286	348	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MEFLTADGRL PNGVVPLPDH FTPFPEPTDE LFLNPTAAIH PPIFAPCKRR RSVRSRQGRN 60 LTMFPEPEPS CGGDDALLSC NAGELGLLVQ TTMNNGAATS ECPVALTPAS DVAVAGNGCP 120 ATEVPIELQM KSEIDAQFTN IISQARALEA ELSFSSDDSD SSEGEKGPDG ERGESKKQKF 180 ALFLEDMVRK VMDKQEQMHK QLIELMEKNE QERILREEDW KQQEIERAKR DAELRSQEMS 240 RSMALLSFLK NFLGEEIQVP SAQVSCPEND ENSIHGQEAK HDSSNRRWPK SEVQALITVR 300 LALDDKFQNG PKGSIWEEVA AGLATMGYTR TPRKCKEKWE NINKYYKKMT KSVKSCPKLY 360 KSCPYFRELD ILYSKELVAP VTGNDVEDVK EMTLECGVNI G

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MEFLTADGRL PNGVVPLPDH FTPFPEPTDE LFLNPTAAIH PPIFAPCKRR RSVRSRQGRN  60
LTMFPEPEPS CGGDDALLSC NAGELGLLVQ TTMNNGAATS ECPVALTPAS DVAVAGNGCP  120
ATEVPIELQM KSEIDAQFTN IISQARALEA ELSFSSDDSD SSEGEKGPDG ERGESKKQKF  180
ALFLEDMVRK VMDKQEQMHK QLIELMEKNE QERILREEDW KQQEIERAKR DAELRSQEMS  240
RSMALLSFLK NFLGEEIQVP SAQVSCPEND ENSIHGQEAK HDSSNRRWPK SEVQALITVR  300
LALDDKFQNG PKGSIWEEVA AGLATMGYTR TPRKCKEKWE NINKYYKKMT KSVKSCPKLY  360
KSCPYFRELD ILYSKELVAP VTGNDVEDVK EMTLECGVNI G

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00552	DAP	Transfer from AT5G47660	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019179126.1	0.0	PREDICTED: trihelix transcription factor GTL1
TrEMBL	A0A314L7R5	1e-110	A0A314L7R5_NICAT; Trihelix transcription factor gt-2
STRING	XP_009771160.1	1e-111	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12884	16	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47660.1	6e-47	Trihelix family protein