PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001726.1_g00011.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 278aa    MW: 28665.8 Da    PI: 6.6125
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001726.1_g00011.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.00051104126123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              y+C+ C+++F++   L  H  +H
  Itr_sc001726.1_g00011.1 104 YQCKTCTRTFPSFQALGGHRASH 126
                              9***********99999998887 PP
2zf-C2H213.80.00017176198123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C++Cg  Fs+   L  H+r+H
  Itr_sc001726.1_g00011.1 176 HECSICGSEFSSGQALGGHMRRH 198
                              78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.08E-8103126No hitNo description
PfamPF139121.5E-11103128IPR007087Zinc finger, C2H2
SMARTSM003550.084104126IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.993104131IPR007087Zinc finger, C2H2
PROSITE patternPS000280106126IPR007087Zinc finger, C2H2
SuperFamilySSF576673.08E-8171198No hitNo description
PROSITE profilePS501579.847176203IPR007087Zinc finger, C2H2
SMARTSM003550.02176198IPR015880Zinc finger, C2H2-like
PfamPF139121.1E-11176200IPR007087Zinc finger, C2H2
PROSITE patternPS000280178198IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MVLVKGKRTK RPRGLSPADS SCSSGGGDGG GGGAVFYSSS AQSPATSTSQ ISTDEDEDMA  60
NCLILLARGG GGGGCRQVER VSGGRKVDEM GGAAAKGGGD LFVYQCKTCT RTFPSFQALG  120
GHRASHKKPK ITAGDDQKKS PPPPPPAAAP ADHEKQNWPL SAAGVFSNGA GKAKIHECSI  180
CGSEFSSGQA LGGHMRRHRP PPTIVPAKPL SVSSDGGTIN VCESSETREK AAPTGGVFTL  240
DLNLPAPLED DDDDDDDQET KLQNNLAFST PALVDCHY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019181695.11e-131PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A4D9A8353e-66A0A4D9A835_SALSN; Uncharacterized protein
STRINGSolyc11g066400.1.15e-62(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12622480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-46C2H2 family protein