PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001700.1_g00003.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

DBB

Protein Properties

Length: 376aa MW: 41505 Da PI: 6.4899

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001700.1_g00003.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	17.1	1.2e-05	4	47	5	42
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ +e e++ C ++ lC +C ++ H H++vpl Itr_sc001700.1_g00003.1 4 QCNVCEVAEANVLCCADEAALCWSCDEKVHAAnklaskHQRVPL 47 7***999*******************66899999999986 PP
2	zf-B_box	19.2	2.5e-06	146	173	16	37
zf-B_box 16 lfCedCqqllCedClleeHkg......H 37 +fC +++ llC++C +++H H Itr_sc001700.1_g00003.1 146 FFCLEDRALLCRKCDVAIHTAnayvsaH 173 9******************545566666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.594	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	7.57E-7	3	47	No hit	No description
SMART	SM00336	2.8E-10	4	47	IPR000315	B-box-type zinc finger
SMART	SM00336	1.6E-5	135	178	IPR000315	B-box-type zinc finger
CDD	cd00021	8.04E-5	140	178	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MKIQCNVCEV AEANVLCCAD EAALCWSCDE KVHAANKLAS KHQRVPLSGS SSSMPNCLCE 60 EKHFGGYEKH YCRCLNKAPG LRGVRTASLS TFESMDAVHS SSAVLHHQCP FLVWLILWLF 120 KYCVNLTGVY LFKEKGLPIK ETVGYFFCLE DRALLCRKCD VAIHTANAYV SAHQRFLLTG 180 VKVGLEPTEP GPSSSLGKSQ SGEKISELEF LSVSRRNPHV ASDIQYNKVL PTQITEVGNF 240 APTKAPFAGG SAAGSIPQWQ LDEFLGLNEF NQNYGYMDNN SSKADSGKLG DTDCSATLRV 300 NEEELDGDEC LGPVLDASWA VPQIPSPPTA SGLYWPKTNQ NSFDSAVFVP DICYSPMQNF 360 DNQQPNCSRM KRRRQY

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MKIQCNVCEV AEANVLCCAD EAALCWSCDE KVHAANKLAS KHQRVPLSGS SSSMPNCLCE  60
EKHFGGYEKH YCRCLNKAPG LRGVRTASLS TFESMDAVHS SSAVLHHQCP FLVWLILWLF  120
KYCVNLTGVY LFKEKGLPIK ETVGYFFCLE DRALLCRKCD VAIHTANAYV SAHQRFLLTG  180
VKVGLEPTEP GPSSSLGKSQ SGEKISELEF LSVSRRNPHV ASDIQYNKVL PTQITEVGNF  240
APTKAPFAGG SAAGSIPQWQ LDEFLGLNEF NQNYGYMDNN SSKADSGKLG DTDCSATLRV  300
NEEELDGDEC LGPVLDASWA VPQIPSPPTA SGLYWPKTNQ NSFDSAVFVP DICYSPMQNF  360
DNQQPNCSRM KRRRQY

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269\|PubMed:18182030, ECO:0000269\|PubMed:18540109, ECO:0000269\|PubMed:18796637, ECO:0000269\|PubMed:21070414, ECO:0000269\|PubMed:21427283}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By light. {ECO:0000269\|PubMed:18182030}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019194560.1	1e-166	PREDICTED: B-box zinc finger protein 22-like
Swissprot	Q9SYM2	6e-55	BBX22_ARATH; B-box zinc finger protein 22
TrEMBL	A0A2G2WEY9	1e-122	A0A2G2WEY9_CAPBA; B-box zinc finger protein 22
STRING	Solyc07g062160.2.1	1e-121	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2892	23	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78600.1	2e-57	light-regulated zinc finger protein 1