PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001694.1_g00004.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 470aa MW: 49491.8 Da PI: 6.5506

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001694.1_g00004.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.9	6.6e-12	277	322	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Itr_sc001694.1_g00004.1 277 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 322 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.76E-17	270	332	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.52E-13	270	326	No hit	No description
PROSITE profile	PS50888	17.39	272	321	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.0E-16	274	331	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.2E-9	277	322	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-13	278	327	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048767	Biological Process	root hair elongation
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence Send to blast
MEQSTNSLIY QQQHQHTSEQ SQMNSVQDFQ VVSGGGATQH HISSSLFDST AASSTDFLEH 60 FLSSVPSSSP WPDLTKSHFP WDSHHLTSPH HLTSPPLLPN PNSAVDDHAY HFDDQSTALL 120 ASKLRQHQIN GDDGGSSSAA KALLLQQQLL LSRGFSGTGL RSPTGRVGEN GLLGMPLSLR 180 NGEQNEAIEN PVSDCSVQPV YNGFTGSLGQ TSSQPHHFNH PQGGSMQAHN FGAQAPSPMN 240 QPPAATASGS TGGAGTAPVQ PKQQRVRARR GQATDPHSIA ERLRRERIAE RMKALQELVP 300 NANKTDKASM LDEIIDYVKF LQLQVKVLSM SRLGGAATVA PLVTDMSSER GGDCLQGGNG 360 ASSSSNNEGM TMTMTEQQVA KLMEEDMGSA MQYLQGKGLC LMPISLATAI STATCHSRNP 420 VGGGSTTNAA EAAGVPSSPS FSVLTVQSAT TMGNGAIDLS AASVSKPSSS

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence Send to blast

MEQSTNSLIY QQQHQHTSEQ SQMNSVQDFQ VVSGGGATQH HISSSLFDST AASSTDFLEH  60
FLSSVPSSSP WPDLTKSHFP WDSHHLTSPH HLTSPPLLPN PNSAVDDHAY HFDDQSTALL  120
ASKLRQHQIN GDDGGSSSAA KALLLQQQLL LSRGFSGTGL RSPTGRVGEN GLLGMPLSLR  180
NGEQNEAIEN PVSDCSVQPV YNGFTGSLGQ TSSQPHHFNH PQGGSMQAHN FGAQAPSPMN  240
QPPAATASGS TGGAGTAPVQ PKQQRVRARR GQATDPHSIA ERLRRERIAE RMKALQELVP  300
NANKTDKASM LDEIIDYVKF LQLQVKVLSM SRLGGAATVA PLVTDMSSER GGDCLQGGNG  360
ASSSSNNEGM TMTMTEQQVA KLMEEDMGSA MQYLQGKGLC LMPISLATAI STATCHSRNP  420
VGGGSTTNAA EAAGVPSSPS FSVLTVQSAT TMGNGAIDLS AASVSKPSSS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	281	286	RLRRER

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00659	PBM	Transfer from Pp3c14_15890	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ444222	2e-94	DQ444222.1 Nicotiana plumbaginifolia Joka8 mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019198027.1	0.0	PREDICTED: transcription factor bHLH66-like isoform X2
Swissprot	Q9ZUG9	3e-88	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A1S3XWA3	1e-165	A0A1S3XWA3_TOBAC; transcription factor bHLH66-like
STRING	XP_009596056.1	1e-166	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3759	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	3e-69	LJRHL1-like 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]