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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc001687.1_g00008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | B3 | ||||||||
Protein Properties | Length: 239aa MW: 27420.9 Da PI: 9.4535 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 35.5 | 1.8e-11 | 21 | 100 | 14 | 99 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 l lp +++ ++kk+ + +l ++ s++vk+ + ++++ +tkGW +Fv +ng+ +Df vF+++g +f++ v +f+ Itr_sc001687.1_g00008.1 21 TSLDLPPIMCKKLNEKKQ--EEAVLIG-QNGSFKVKI--QECKDQgLCFTKGWDDFVGQNGIAFKDFAVFEHMG--SFHFSVVLFD 99 458899999999876644..4788888.55699****..665555599***********************887..6766888777 PP S CS B3 99 k 99 + Itr_sc001687.1_g00008.1 100 Q 100 5 PP | |||||||
2 | B3 | 40.9 | 3.6e-13 | 132 | 225 | 3 | 89 |
EE-..-HHHHT....T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTE.EEE-TTHHHHHHHHT--TT-EE CS B3 3 kvltpsdvlks....grlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgr.yvltkGWkeFvkangLkegDfv 80 ++++++++l++ ++ ++pkkf ++++ +s+ +tl+ + g++W kl+ + ks++ + +GWkeF+ +Lk++D++ Itr_sc001687.1_g00008.1 132 TTTIKAYNLRRgvdfNLQYIPKKFSLSNNLL--KSTNITLRGPCGKTWPAKLKSrggKVKSKAyACILDGWKEFAMYYHLKVRDVC 215 5566666666666656679*****9999888..5678***************77565444444645557***************** PP EEEE-SS.SE CS B3 81 vFkldgr.se 89 F++++ ++ Itr_sc001687.1_g00008.1 216 SFRFIRLpTS 225 ***9875454 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.14E-13 | 10 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.0016 | 11 | 101 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.9E-13 | 11 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 5.7E-9 | 20 | 100 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 8.177 | 49 | 101 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.0E-17 | 126 | 221 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.49E-16 | 128 | 221 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.14E-14 | 130 | 230 | No hit | No description |
SMART | SM01019 | 1.8E-6 | 130 | 236 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.546 | 134 | 234 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.8E-10 | 149 | 221 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MEHNLPIGWR FFKIMGWGFH TSLDLPPIMC KKLNEKKQEE AVLIGQNGSF KVKIQECKDQ 60 GLCFTKGWDD FVGQNGIAFK DFAVFEHMGS FHFSVVLFDQ TCCQKDLHPN PETCHEGGKN 120 WCTGQENSSC FTTTIKAYNL RRGVDFNLQY IPKKFSLSNN LLKSTNITLR GPCGKTWPAK 180 LKSRGGKVKS KAYACILDGW KEFAMYYHLK VRDVCSFRFI RLPTSYSFMV DVKKILPVN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019175025.1 | 1e-118 | PREDICTED: B3 domain-containing protein REM9-like | ||||
Refseq | XP_019175026.1 | 1e-118 | PREDICTED: B3 domain-containing protein REM9-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8536 | 16 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24700.1 | 1e-16 | B3 family protein |