PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001686.1_g00005.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 325aa    MW: 35581.7 Da    PI: 5.0324
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001686.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.23.7e-121156145
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHH.HT-EEEEEEE-TTSE CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvL.Cdaevaviifsstgk 45
                             k+ie+   r+v f+kRr+g++KKA EL  L  ++++a ++fs+ g+
  Itr_sc001686.1_g00005.1 11 KKIESLQARNVCFTKRRKGLFKKAAELGHLfPEVRIAAVVFSPAGN 56
                             689************************988469*********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-11363IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.886364IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.66E-14470IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-7525IPR002100Transcription factor, MADS-box
PfamPF003192.3E-151258IPR002100Transcription factor, MADS-box
CDDcd001205.50E-111461No hitNo description
PRINTSPR004041.6E-72540IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MGKGKAKIAI KKIESLQARN VCFTKRRKGL FKKAAELGHL FPEVRIAAVV FSPAGNPYVL  60
GDLSEMEKLL TMEESRKERL TSEETEKGEE ENAGSDPVVE ITAVTNSTQQ VITESVDMTL  120
NPSMVTDFTM KEVTENKNAR FCVQDTTFAS SSHCLEMPIV DSDFCAADFD GFDEEGLYSC  180
CSKFLVTNSE SWSLAASTPI VPRVSVFFIS TFLGFRLLLL LLQPFAKLEL EGGQTAVRQE  240
NNLLVVLLAL AGGGSFAVVL SRKMPSVGTG CLLKKGISTS GREDWRVIEN VAEDDSVSGI  300
SISFKTDFGI ASELKQGRHR HVELN
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23371757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.17e-08AGAMOUS-like 29