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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc001686.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 64aa MW: 7158.18 Da PI: 8.2184 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 30.6 | 4.4e-10 | 24 | 60 | 13 | 48 |
HHHHHHHHHHHHHHHHHH.HT-EEEEEEE-TTSEEEE CS SRF-TF 13 fskRrngilKKAeELSvL.Cdaevaviifsstgklye 48 f Rr+g++KKA EL L ++++a ++fs+ g+ y Itr_sc001686.1_g00001.1 24 FHERRKGLFKKAAELGCLiPEVRIAAVVFSPAGNPYV 60 889************666269***********98665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 6.15E-9 | 22 | 62 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.1E-11 | 24 | 61 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 64 aa Download sequence Send to blast |
LSWAKGSEDS DQENRVFAGP KCLFHERRKG LFKKAAELGC LIPEVRIAAV VFSPAGNPYV 60 FEYN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01530.1 | 7e-08 | AGAMOUS-like 28 |