PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001618.1_g00011.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family B3
Protein Properties Length: 544aa    MW: 61114.6 Da    PI: 8.0733
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001618.1_g00011.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.93.8e-1816991099
                             HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                       B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                             + +s  l +p kfa++++g++  s + +l  +sg++W v +  ++ +g+ ++ +GW  Fvk++ L+ gD++vF++dg+  f  +v+vf
  Itr_sc001618.1_g00011.1 16 SISSEKLKIPSKFAKHMDGVT--SGMASLVGPSGNTWYVGV--SQLDGGLFFHDGWTIFVKDHCLEYGDSLVFRYDGDLHF--HVQVF 97
                             456677********8889995..459***************..9*******************************997777..9**99 PP

                             -S CS
                       B3 98 rk 99
                             ++
  Itr_sc001618.1_g00011.1 98 DE 99
                             85 PP
2B358.61.1e-18243338199
                              EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                              f kv+++ +v+ s  l +p +fa+eh   ++++++++l++++g+sW v+ i  ++ + ++++ +GW  Fv++n+L+ gD+++F+l+
  Itr_sc001618.1_g00011.1 243 FTKVMKRFNVSGSFTLNVPYQFATEHL--PKCKVKIMLRNLKGQSWVVNSIPtTRVQTSHTFCGGWLAFVRDNNLDLGDICIFELV 326
                              88999999******************6..34999****************77566666699***********************98 PP

                              SSSEE..EEEEE-S CS
                       B3  86 grsefelvvkvfrk 99 
                              +  ++el+v+++r 
  Itr_sc001618.1_g00011.1 327 H--KGELRVRILRV 338
                              7..77789999985 PP
3B348.41.7e-154335091087
                              HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                       B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87 
                               + s  l +p +f  eh   +++ ++++l++++g+sW+v+ i + + ++ +++ +GW  Fv++n+++ gD+++F+l+g+
  Itr_sc001618.1_g00011.1 433 ISGSYTLKVPYQFSMEHL--PNCRTKIILRNLKGQSWTVNSIPTTRVQTlHTFCGGWMAFVRDNDIQMGDICIFELVGK 509
                              455667999****99996..45889****************8766666679999*********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-22399IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.88E-233102IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.8447100IPR003340B3 DNA binding domain
SMARTSM010192.3E-129100IPR003340B3 DNA binding domain
PfamPF023623.4E-151599IPR003340B3 DNA binding domain
CDDcd100172.44E-181798No hitNo description
Gene3DG3DSA:2.40.330.102.0E-23235337IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.83E-24236338IPR015300DNA-binding pseudobarrel domain
CDDcd100175.99E-19241337No hitNo description
SMARTSM010195.9E-17243339IPR003340B3 DNA binding domain
PROSITE profilePS5086314.015243339IPR003340B3 DNA binding domain
PfamPF023624.1E-16243337IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-20419512IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-22420518IPR015300DNA-binding pseudobarrel domain
CDDcd100173.61E-18422519No hitNo description
PROSITE profilePS5086312.125424522IPR003340B3 DNA binding domain
SMARTSM010196.8E-10424521IPR003340B3 DNA binding domain
PfamPF023622.5E-12424509IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MSNGRKPHFL HGFNPSISSE KLKIPSKFAK HMDGVTSGMA SLVGPSGNTW YVGVSQLDGG  60
LFFHDGWTIF VKDHCLEYGD SLVFRYDGDL HFHVQVFDEG SCEKEVAFCA DCSQDVTNFE  120
NHAVKKRDRK SLGLLDCIAE GVPKRMRSTE IHSECQTSGQ ENQVTSSKEE YLCGELVCLR  180
EMEIDGNPLK DFVTIAVPSQ GKCVYENSVD ATISSWTNDE DVWLSTQEAE RAARSFTSSF  240
PNFTKVMKRF NVSGSFTLNV PYQFATEHLP KCKVKIMLRN LKGQSWVVNS IPTTRVQTSH  300
TFCGGWLAFV RDNNLDLGDI CIFELVHKGE LRVRILRVEK EGVNDHSSVT AHKTVSNEKG  360
KHRSTLKSSF LHTQLNATGG QSVTRKGTSS QDKLGSSTKG CMSLKSAPEE KIAAQAFISS  420
FPHFVRVMKK FNISGSYTLK VPYQFSMEHL PNCRTKIILR NLKGQSWTVN SIPTTRVQTL  480
HTFCGGWMAF VRDNDIQMGD ICIFELVGKC EMRDCRLVFN SPFCKGENWG HMLLDVMRED  540
VHGR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019174405.10.0PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X1
RefseqXP_019174406.10.0PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X1
RefseqXP_019174408.10.0PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X1
TrEMBLA0A328DNW70.0A0A328DNW7_9ASTE; Uncharacterized protein
STRINGXP_009781392.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA98202126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-20B3 family protein