PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001618.1_g00007.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family B3
Protein Properties Length: 517aa    MW: 58139.1 Da    PI: 7.0643
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001618.1_g00007.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.61.3e-14191031299
                              HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
                       B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
                               +  l+lp   +e+ +g+ +   t tl +e+gr Wev +   +++g ++++kGW  Fv+ +gL++g+f vF+++g   +f  +v++
  Itr_sc001618.1_g00007.1  19 CHTKLTLPPLVCEKLEGDDKLLETATLVTEKGR-WEVGI-GHGSKGNFYFEKGWDVFVQNHGLRVGEFAVFEYIGGgICF--NVSL 100
                              45569**********8888888999*9998885.*****.4566666***************************866777..7777 PP

                              E-S CS
                       B3  97 frk 99 
                              ++k
  Itr_sc001618.1_g00007.1 101 LDK 103
                              776 PP
2B342.21.5e-13415500588
                              -..-HHHHT..T-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                       B3   5 ltpsdvlks..grlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                              l+++++ +s    + +p +f+ ++++   ++  +tl+ +s  r+ ++k++  +k +  ++t+GW eF   n+L+egD+++Fkl +r
  Itr_sc001618.1_g00007.1 415 LMKPYHVRSrsPYMHIPAEFCVANELY--QNARITLKGPSDeRQVSLKVCKGGKTKYAIITRGWPEFIAGNNLEEGDTCIFKLPSR 498
                              444444444245689*********888..5567*****66659******666666669************************8755 PP

                              .S CS
                       B3  88 .s 88 
                               s
  Itr_sc001618.1_g00007.1 499 rS 500
                              34 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.71E-129109IPR015300DNA-binding pseudobarrel domain
CDDcd100171.69E-159102No hitNo description
Gene3DG3DSA:2.40.330.104.7E-1311105IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.2E-611104IPR003340B3 DNA binding domain
PfamPF023627.8E-1220103IPR003340B3 DNA binding domain
PROSITE profilePS5086310.54651104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.7E-15404514IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-14409496IPR015300DNA-binding pseudobarrel domain
CDDcd100171.28E-13412514No hitNo description
SMARTSM010191.8E-8412516IPR003340B3 DNA binding domain
PROSITE profilePS5086310.532413516IPR003340B3 DNA binding domain
PfamPF023628.9E-11416500IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MEGKLQVGWR FFKVMAFDCH TKLTLPPLVC EKLEGDDKLL ETATLVTEKG RWEVGIGHGS  60
KGNFYFEKGW DVFVQNHGLR VGEFAVFEYI GGGICFNVSL LDKNGSEKAF SQSEQGQNLA  120
SKLNPLTHQI SQDEVLLEET VPPCSIEEEG EDVNLVAVKL EEDEDMITSH LNARLAPLYA  180
ILAEIDNEDL PSCTNIHEED SNRGHSQANI PEHDNNKRIA DQERSKENSS FASPAEIDSE  240
KACPSXIRKG EQHAIKVPMK FEVDEVEDEV PSQIELRNPG KGRCSVKRKR DDKTVPSQAK  300
SQKHDMNRCS AKKNRDDDKT PSQAKPQKHD MNKCSKKQER DDDRAPSPAI TQKHEKNKSP  360
VKNDKNKSSL KQKNHKDQVP SKPKGCAHDK GDTERKRELK VNTSSREQSL QFSTLMKPYH  420
VRSRSPYMHI PAEFCVANEL YQNARITLKG PSDERQVSLK VCKGGKTKYA IITRGWPEFI  480
AGNNLEEGDT CIFKLPSRRS SSDAAVVLDV EVLRAST
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019175023.10.0PREDICTED: uncharacterized protein LOC109170386 isoform X3
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85361630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-08B3 family protein