PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001574.1_g00009.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Dof

Protein Properties

Length: 661aa MW: 72310.8 Da PI: 7.5857

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001574.1_g00009.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	117	7.4e-37	18	73	7	62
zf-Dof 7 kcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +cprC s+ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rk ++++ Itr_sc001574.1_g00009.1 18 TCPRCGSMNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKTRRAK 73 7***************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	28.528	17	71	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.2E-31	18	71	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	4.0E-27	19	71	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	19	55	IPR003851	Zinc finger, Dof-type
SuperFamily	SSF56672	6.0E-5	492	597	No hit	No description
Pfam	PF07727	7.3E-6	515	561	IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 661 aa Download sequence Send to blast
MMEGAPATWK PNVEISPTCP RCGSMNTKFC YYNNYSLTQP RYFCKGCRRY WTKGGSLRNV 60 PVGGGCRKTR RAKSSSIRVV SNHRRGGVFG ISAADNNNPG GSTTSPASAS AGAAGGTNGP 120 APNIDLAAVY ANFMNPNPNP QPAHIPETTL PNNNDGGGGA DPSFEFSGYP AMLNVDYFVP 180 EAAMAPQDGG FVVDEFGNNN NSAAALFQEQ FCGESLPPIL PPHEELTTSE GWPTHNSDMN 240 MNMNMNMMFP LHHTISDHHH EPELQERTAT HVPNSVSSPA LAYANAPVWV VKDRVTKVEL 300 LRGPSSGGFY SLRVPGRSPI ALLSARASSN VWHNCLWHPH YRILNKILLA KMSGYLESFR 360 GYRCIDQATG KVASRGLDPP CGVDLVVHVG DPLPNAPFVS HDNLAGILAV EPVSEFSQHP 420 TWVPRRRASS IGPMHCTHPM VLRHMSQAAR VEPRALVVSA TSADPSCYTE AWVFHTKRKA 480 DGSVERYKPR QLDVHNVFLN GKLAETVYMQ QPPGSQVFLL VYVDDILIMA NDDKLISVLL 540 QRLPSLIKIR DLGSPNFFLA LRRFDFPNEP FDNPTLYRSI AGSLQYLTVT RPNLSYAGTI 600 DLGMRLCPLD SSDIHAFLDF DWAGDPVDRQ STSGFDVFLG RNLRMMGYGF EASCGGGGQS 660 L

Sequence ? help Back to Top

Protein Sequence Length: 661 aa Download sequence Send to blast

MMEGAPATWK PNVEISPTCP RCGSMNTKFC YYNNYSLTQP RYFCKGCRRY WTKGGSLRNV  60
PVGGGCRKTR RAKSSSIRVV SNHRRGGVFG ISAADNNNPG GSTTSPASAS AGAAGGTNGP  120
APNIDLAAVY ANFMNPNPNP QPAHIPETTL PNNNDGGGGA DPSFEFSGYP AMLNVDYFVP  180
EAAMAPQDGG FVVDEFGNNN NSAAALFQEQ FCGESLPPIL PPHEELTTSE GWPTHNSDMN  240
MNMNMNMMFP LHHTISDHHH EPELQERTAT HVPNSVSSPA LAYANAPVWV VKDRVTKVEL  300
LRGPSSGGFY SLRVPGRSPI ALLSARASSN VWHNCLWHPH YRILNKILLA KMSGYLESFR  360
GYRCIDQATG KVASRGLDPP CGVDLVVHVG DPLPNAPFVS HDNLAGILAV EPVSEFSQHP  420
TWVPRRRASS IGPMHCTHPM VLRHMSQAAR VEPRALVVSA TSADPSCYTE AWVFHTKRKA  480
DGSVERYKPR QLDVHNVFLN GKLAETVYMQ QPPGSQVFLL VYVDDILIMA NDDKLISVLL  540
QRLPSLIKIR DLGSPNFFLA LRRFDFPNEP FDNPTLYRSI AGSLQYLTVT RPNLSYAGTI  600
DLGMRLCPLD SSDIHAFLDF DWAGDPVDRQ STSGFDVFLG RNLRMMGYGF EASCGGGGQS  660
L

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00405	DAP	Transfer from AT3G52440	Download

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12963	13	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	9e-40	Dof family protein