PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001565.1_g00005.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 383aa    MW: 40813.6 Da    PI: 6.8591
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001565.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.11.8e-09148172226
                              -S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                              ++e+Cr ++++ +C++G +C++aHg
  Itr_sc001565.1_g00005.1 148 RREPCRVWQQYRYCRFGHSCQYAHG 172
                              79**********************9 PP
2zf-CCCH20.77.2e-07184210127
                              --S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                              yk e Cr    +GtC+yG+rC++ H++
  Itr_sc001565.1_g00005.1 184 YKSEMCRSIINSGTCPYGPRCRYFHPQ 210
                              666777777779*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.235146174IPR000571Zinc finger, CCCH-type
SMARTSM003560.13147173IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-7148177IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-6148172IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-9150178IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-10179209IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-8182212IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.047183211IPR000571Zinc finger, CCCH-type
SMARTSM003560.0014183210IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MENLRGNYNN PKTPTIKFFE GNAVPIHNRF HTPVPLSPVF DPYELSENFN TPNPLSPLVQ  60
SLRSGSSVPF DGSGGGSRSS GTRGGFGSPL SSIENLLTQP LGSPITVFKT PVKVEEDVIV  120
MDGFPVNPKG GSSRPRGTVP SDPGLGQRRE PCRVWQQYRY CRFGHSCQYA HGVQELHPPA  180
PKNYKSEMCR SIINSGTCPY GPRCRYFHPQ PQNQVNPAVQ SPAPRAEVAI PPQDQVNPAV  240
QSPAPRAEAA IPPQDQVNPV VQSPASRAEV AIPPQDQVNP AVQSPAPRAE VAIPVSTPTV  300
VKDPASGGNS STSATASTAT ASGNNDWSPA DDGIETSLPG KAPAVDVNAH IQTALYGPSG  360
RKRLPIFGEI CPEPEPEIDP KPE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019171491.11e-113PREDICTED: mRNA decay activator protein ZFP36-like
RefseqXP_019171493.11e-113PREDICTED: mRNA decay activator protein ZFP36-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77651824
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.13e-13C3H family protein