 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Itr_sc001565.1_g00004.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
| Family |
NAC |
| Protein Properties |
Length: 198aa MW: 22383.8 Da PI: 4.8071 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Itr_sc001565.1_g00004.1 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 117.8 | 1.1e-36 | 8 | 127 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86
lppGfrF Ptdeelvv++L++k++ +++ +vi+++d+y ++PwdL+ ++ +e ++wyf+s+r +r+t++gyWka
Itr_sc001565.1_g00004.1 8 LPPGFRFYPTDEELVVHFLHRKAALLPCHP-DVIPDLDLYPYDPWDLEGRAMGEGNKWYFYSRRTA--------SRITSNGYWKAL 84
79*************************999.99**************977778899******9854........799********* PP
NAM 87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
g d++++ + +g+ vg+k+ +fy g+ p+gekt+Wvm+eyrl
Itr_sc001565.1_g00004.1 85 GGDEPIFPSsGGHRVGVKRCYAFYIGEPPQGEKTSWVMQEYRL 127
*******8868899***************************98 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010089 | Biological Process | xylem development |
| GO:0043067 | Biological Process | regulation of programmed cell death |
| GO:0048367 | Biological Process | shoot system development |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 198 aa
Download sequence Send
to blast |
MGENSVNLPP GFRFYPTDEE LVVHFLHRKA ALLPCHPDVI PDLDLYPYDP WDLEGRAMGE 60
GNKWYFYSRR TASRITSNGY WKALGGDEPI FPSSGGHRVG VKRCYAFYIG EPPQGEKTSW 120
VMQEYRLSAS PDSASASTTS AKSSSRRRTH SKNDYSKWVI CRVYDSNCDD DGDDGNELSC 180
LDEVFLSLDD LDEISLPH
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 1e-39 | 4 | 167 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-39 | 4 | 167 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-39 | 4 | 167 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-39 | 4 | 167 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 1e-39 | 4 | 167 | 16 | 169 | NAC domain-containing protein 19 |
| 3swm_B | 1e-39 | 4 | 167 | 16 | 169 | NAC domain-containing protein 19 |
| 3swm_C | 1e-39 | 4 | 167 | 16 | 169 | NAC domain-containing protein 19 |
| 3swm_D | 1e-39 | 4 | 167 | 16 | 169 | NAC domain-containing protein 19 |
| 3swp_A | 1e-39 | 4 | 167 | 16 | 169 | NAC domain-containing protein 19 |
| 3swp_B | 1e-39 | 4 | 167 | 16 | 169 | NAC domain-containing protein 19 |
| 3swp_C | 1e-39 | 4 | 167 | 16 | 169 | NAC domain-containing protein 19 |
| 3swp_D | 1e-39 | 4 | 167 | 16 | 169 | NAC domain-containing protein 19 |
| 4dul_A | 1e-39 | 4 | 167 | 13 | 166 | NAC domain-containing protein 19 |
| 4dul_B | 1e-39 | 4 | 167 | 13 | 166 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
