PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001562.1_g00013.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ARR-B
Protein Properties Length: 695aa    MW: 76250.1 Da    PI: 5.539
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001562.1_g00013.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.38.5e-29243296155
                  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                              kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
  Itr_sc001562.1_g00013.1 243 KPRVVWSVELHQQFVAAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 296
                              79*******************.********************************8 PP
2Response_reg807.9e-27631711109
                              EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHH CS
             Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeee 84 
                              vl+vdD+p+ +++l+++l++ +y ev+++  +e al +l+e++  +D++l D+ mp+mdG++ll+ i  e  +lp+i+++a ++++
  Itr_sc001562.1_g00013.1  63 VLVVDDDPTCLRILEKMLRNCRY-EVTTCNMAEVALSMLRENKngFDIVLSDVHMPDMDGFKLLECIGLEM-DLPVIMMSADDSKN 146
                              89*********************.***************999999**********************6654.8************* PP

                              HHHHHHHTTESEEEESS--HHHHHH CS
             Response_reg  85 dalealkaGakdflsKpfdpeelvk 109
                               + + +  Ga d+l Kp+ +e+l +
  Itr_sc001562.1_g00013.1 147 VVMKGVTHGAYDYLIKPVRIEALKN 171
                              *********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363923.9E-18037687IPR017053Response regulator B-type, plant
SuperFamilySSF521721.18E-3560184IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23006.2E-4260196No hitNo description
SMARTSM004481.2E-2761173IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.19362177IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.6E-2363171IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.12E-2664176No hitNo description
PROSITE profilePS5129410.737240299IPR017930Myb domain
SuperFamilySSF466895.2E-20241300IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-30242301IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-24243296IPR006447Myb domain, plants
PfamPF002491.0E-7245295IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010082Biological Processregulation of root meristem growth
GO:0010119Biological Processregulation of stomatal movement
GO:0010150Biological Processleaf senescence
GO:0071368Biological Processcellular response to cytokinin stimulus
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    Send to blast
MPKHLSGVFS GISGYWLNIE DEGEEKINLG CGEVAKPMSV HSSVASWKPV DGVSDQFPVG  60
LRVLVVDDDP TCLRILEKML RNCRYEVTTC NMAEVALSML RENKNGFDIV LSDVHMPDMD  120
GFKLLECIGL EMDLPVIMMS ADDSKNVVMK GVTHGAYDYL IKPVRIEALK NIWQHVVRKR  180
KQELKDKDVE QSGSVEEGDR QQKPSEDVDY SSSANEGNWK CLKKRKDEED EGEERDETSA  240
LKKPRVVWSV ELHQQFVAAV NQLGIDKAVP KKILELMNVP GLTRENVASH LQKYRLYLRR  300
LSGVSQHQSG LNSSFMGPPD TTFGAMSSLN GLDFQTLAAT GQISAQSLAS LQAAALGRSA  360
TKPAISMPLV DQRNLFSFEN PKFRFVEGQQ PLNNNSKQIG LLHGIPTTME PKQLASLNQS  420
SQTFRGRGMQ PPVHQNNSLL MQQMGPPQSQ AHMLNEPNGT QVSRVTQPIL SNGMPSELLA  480
RNGIVDNSRG AIYQPVSQAQ PLVDFSVNQN TEMQGNSFIS GNSGMSCLAS KRIEVNSDVK  540
RPIGGFAPPS YDIFNDLQQH KAQDDWGMGA VFEASRLPNA QGTLDASQSV MVQQGFSSSQ  600
NSGQNGGMSI GKAVFPSGQE SRNPMVGPQL NSLLGGNSIT IKAERLPDAS YQNTLFPDQH  660
GQDDLMSALL KQQESVGPVE NEFSFDGFQL GNLPV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A6e-23239302164ARR10-B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219225KCLKKRK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00054PBMTransfer from AT4G16110Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019177684.10.0PREDICTED: two-component response regulator ARR2-like
RefseqXP_019177685.10.0PREDICTED: two-component response regulator ARR2-like
RefseqXP_019177686.10.0PREDICTED: two-component response regulator ARR2-like
SwissprotQ9ZWJ90.0ARR2_ARATH; Two-component response regulator ARR2
TrEMBLM1C6070.0M1C607_SOLTU; Two-component response regulator
STRINGPGSC0003DMT4000605060.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31912450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-168response regulator 2
Publications ? help Back to Top
  1. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  2. Ge XM, et al.
    Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
    Plant J., 2015. 82(1): p. 138-50
    [PMID:25704455]
  3. Takahashi N,Umeda M
    Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
    Plant Signal Behav, 2014. 9(8): p. e29396
    [PMID:25763620]
  4. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  5. Arnaud D, et al.
    Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(3): p. 543-559
    [PMID:28254779]
  6. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  7. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  8. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  9. Takatsuka H,Higaki T,Umeda M
    Actin Reorganization Triggers Rapid Cell Elongation in Roots.
    Plant Physiol., 2018. 178(3): p. 1130-1141
    [PMID:30185441]