PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc001518.1_g00007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 257aa MW: 29837.1 Da PI: 4.8289 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.1 | 9.9e-21 | 71 | 124 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t++q+e+Le+ F ++++ e+++eLA++lgL rqV vWFqNrRa++k Itr_sc001518.1_g00007.1 71 KKRRLTSQQVEVLEKSFLGEKKVEGERKKELASNLGLHPRQVAVWFQNRRARWK 124 56689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 112.8 | 2.2e-36 | 71 | 161 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 kkrrl+++qv++LE+sF e+k+e erK+ela++Lgl+prqvavWFqnrRAR+k+kqlE+dy +Lk+++d l + + + k+++ L Itr_sc001518.1_g00007.1 71 KKRRLTSQQVEVLEKSFLGEKKVEGERKKELASNLGLHPRQVAVWFQNRRARWKAKQLERDYVQLKSSHDYLLCHYNFILKQNQML 156 9************************************************************************************* PP HD-ZIP_I/II 88 reelk 92 ++e++ Itr_sc001518.1_g00007.1 157 KAEVN 161 *9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.28E-18 | 56 | 128 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.313 | 66 | 126 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.3E-18 | 69 | 130 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.81E-16 | 71 | 127 | No hit | No description |
Pfam | PF00046 | 3.2E-18 | 71 | 124 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-20 | 73 | 132 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 3.0E-6 | 97 | 106 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 101 | 124 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.0E-6 | 106 | 122 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 9.0E-10 | 126 | 167 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MESGGFIFNP SSHADVLFLG KADPPFPGGS WSVMKMEESL KRRPSCLLSG SQSLVFDDEE 60 YYEEEQSSSD KKRRLTSQQV EVLEKSFLGE KKVEGERKKE LASNLGLHPR QVAVWFQNRR 120 ARWKAKQLER DYVQLKSSHD YLLCHYNFIL KQNQMLKAEV NLLSKKLEGN CKEVDDDDAP 180 RMKVVEEECG SPKQQQQLMD NYYYCVGGTW KTSNTNNNNF QNEDYEEEDM DHHVCNSLPH 240 AQTTTDDDDE PLGWFWS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 118 | 126 | RRARWKAKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019161314.1 | 1e-131 | PREDICTED: homeobox-leucine zipper protein HAT5-like isoform X4 | ||||
Swissprot | Q02283 | 8e-44 | HAT5_ARATH; Homeobox-leucine zipper protein HAT5 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7891 | 23 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 1e-40 | homeobox 1 |
Publications ? help Back to Top | |||
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