PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001475.1_g00002.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

G2-like

Protein Properties

Length: 404aa MW: 45076.4 Da PI: 7.4314

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001475.1_g00002.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.2	7.6e-33	35	89	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wt++LHerFveav+qLGG++kAtPk++l+ m+++gLtl+h+kSHLQkYRl Itr_sc001475.1_g00002.1 35 KPRLKWTQDLHERFVEAVHQLGGADKATPKSVLKQMGIQGLTLYHLKSHLQKYRL 89 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.453	32	92	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-30	33	90	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.87E-16	34	90	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.0E-23	35	90	IPR006447	Myb domain, plants
Pfam	PF00249	2.1E-10	37	88	IPR001005	SANT/Myb domain
Pfam	PF14379	3.6E-24	140	186	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence Send to blast
MHPSTNMLMP PERHLFMQGE NGHGDSGLVL STDAKPRLKW TQDLHERFVE AVHQLGGADK 60 ATPKSVLKQM GIQGLTLYHL KSHLQKYRLS KNLHGHANSG SNKAMSSRMD AATGSDKIPE 120 ANGNHMNSAN IGPLANTNLP ISEAIQIQIE VQRRLHEQLE VQRHLQLRIE AQGKYLQAVL 180 EKAQETLGRQ DLGKMGLEAA KAQLSELVSK VSNQCLNSAF SGIKELPGFC QQQAQATQPT 240 DCSLDSCLTS SEGSLRDHEM RNSQMGLRSL NFGAHMESTD LYNETRLKQT EFRWSDDIWE 300 NRKYLSKMDE ETKNNGLSVS TGLQGGKWNG NSNYSDRRFT GTDADVKLFA QAVDRSDASK 360 PEKQKTSQEY KLPYFGPKLD LNTDDKTDVA SSCKQLDLNG FSWN

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence Send to blast

MHPSTNMLMP PERHLFMQGE NGHGDSGLVL STDAKPRLKW TQDLHERFVE AVHQLGGADK  60
ATPKSVLKQM GIQGLTLYHL KSHLQKYRLS KNLHGHANSG SNKAMSSRMD AATGSDKIPE  120
ANGNHMNSAN IGPLANTNLP ISEAIQIQIE VQRRLHEQLE VQRHLQLRIE AQGKYLQAVL  180
EKAQETLGRQ DLGKMGLEAA KAQLSELVSK VSNQCLNSAF SGIKELPGFC QQQAQATQPT  240
DCSLDSCLTS SEGSLRDHEM RNSQMGLRSL NFGAHMESTD LYNETRLKQT EFRWSDDIWE  300
NRKYLSKMDE ETKNNGLSVS TGLQGGKWNG NSNYSDRRFT GTDADVKLFA QAVDRSDASK  360
PEKQKTSQEY KLPYFGPKLD LNTDDKTDVA SSCKQLDLNG FSWN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-19	34	91	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-19	34	91	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-19	35	91	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-19	35	91	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-19	35	91	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-19	35	91	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-19	34	91	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-19	34	91	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-19	34	91	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-19	34	91	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-19	34	91	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-19	34	91	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act on the GAL1 promoter (PubMed:12008900). Acts redundantly with MYR2 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:12008900}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019187464.1	0.0	PREDICTED: myb-related protein 1-like isoform X2
Swissprot	Q9FK47	1e-126	PHLA_ARATH; Myb-related protein 1
TrEMBL	A0A1J6KU24	0.0	A0A1J6KU24_NICAT; Myb-related protein 2
STRING	XP_009619712.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2946	24	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18240.4	1e-128	myb-related protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]