PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001466.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 289aa    MW: 32530.4 Da    PI: 8.8789
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001466.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.8e-171461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g W++eEde+lv+ ++++G g+W+++++  g+ R++k+c++rw +yl
  Itr_sc001466.1_g00003.1 14 KGLWSPEEDEKLVNHIEKFGHGCWSSVPKLAGLERCGKSCRLRWINYL 61
                             678*******************************************97 PP
2Myb_DNA-binding48.22.6e-1567109145
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                              rg +++eE+ l+++++++lG++ W+ Ia++++ gRt++++k+ w+
  Itr_sc001466.1_g00003.1  67 RGTFSQEEENLIIELHALLGNK-WSQIAARLP-GRTDNEIKNLWN 109
                              899*******************.*********.*********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.8E-27664IPR009057Homeodomain-like
PROSITE profilePS5129418.449961IPR017930Myb domain
SuperFamilySSF466894.4E-3012108IPR009057Homeodomain-like
SMARTSM007178.4E-141363IPR001005SANT/Myb domain
PfamPF002491.1E-151461IPR001005SANT/Myb domain
CDDcd001671.41E-111761No hitNo description
PROSITE profilePS5129425.25762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.9E-2665117IPR009057Homeodomain-like
SMARTSM007171.4E-1366114IPR001005SANT/Myb domain
PfamPF002491.9E-1467109IPR001005SANT/Myb domain
CDDcd001671.35E-969109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MGRHSCCYKQ KLRKGLWSPE EDEKLVNHIE KFGHGCWSSV PKLAGLERCG KSCRLRWINY  60
LRPDLKRGTF SQEEENLIIE LHALLGNKWS QIAARLPGRT DNEIKNLWNS SIKKKLKQKG  120
IDPNTHKPLS QVESAEKAQL FNNNSGFLSS NRNNLVEFNN PKSSQMISGF NPNPNSNSNT  180
ILDDHHCSSS IKLQGSPVFF NSSGFPWLVS GSEKSEKLTD PEDIKWSEYL LGNSIPNQPE  240
PQFTITEEGS FSTTASTWLQ NQHPSLQAAN LCTASKHFQR PSAASTQFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-291211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019179143.10.0PREDICTED: transcription factor MYB86-like
TrEMBLA0A1S3X8264e-91A0A1S3X826_TOBAC; transcription factor MYB86-like
TrEMBLA0A1S3YF185e-91A0A1S3YF18_TOBAC; transcription factor MYB86-like
TrEMBLA0A1U7VKG24e-91A0A1U7VKG2_NICSY; transcription factor MYB86-like
TrEMBLA0A2G9HHR32e-91A0A2G9HHR3_9LAMI; Transcription factor, Myb superfamily
STRINGXP_009762834.17e-92(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.17e-88myb domain protein 61